Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0471
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12979| Best HMM Match : GYF (HMM E-Value=8.6e-05)                   84   1e-16
SB_48444| Best HMM Match : Death (HMM E-Value=2.1e-16)                 29   2.6  
SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22)                    28   7.8  

>SB_12979| Best HMM Match : GYF (HMM E-Value=8.6e-05)
          Length = 341

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 34/72 (47%), Positives = 47/72 (65%)
 Frame = +3

Query: 357 NVMNSNDXXXXXXXXXXXXXXXXXXPFNMKEELEEGHFDTQGHYHWKKEKEIRDGWLDNI 536
           N++++ D                  PFN+KEE+EEGHFD +G+YH KKEKEIRD WLD++
Sbjct: 51  NILSTEDIDGQEEATLDHDGEIKITPFNLKEEMEEGHFDNEGNYHLKKEKEIRDDWLDSV 110

Query: 537 DWVKVKGRPEDK 572
           DWVK+K   ++K
Sbjct: 111 DWVKIKEMDKNK 122


>SB_48444| Best HMM Match : Death (HMM E-Value=2.1e-16)
          Length = 486

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/45 (35%), Positives = 29/45 (64%)
 Frame = +3

Query: 153 NLVESDSLNLSSPIQEKAPKILLGYFTKMSKRPASEALIDEVKKA 287
           N++ES  ++    IQEKA ++LL +   MSK+   +AL+D + ++
Sbjct: 159 NIIESIDVDYRR-IQEKAYQMLLAWQRTMSKKATVQALMDGLARS 202


>SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +3

Query: 177 NLSSPIQEKAPKILLGYFTKMSKRPASEALIDEVKKAT 290
           +LSS   + +P   +G+F ++ +RP+  +L D ++K++
Sbjct: 519 DLSSSSPDSSPNADVGFFGRLKRRPSLGSLTDIIQKSS 556


>SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22)
          Length = 699

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +2

Query: 11  HDTHNKINN*DLRPYLDRHKNID-FIDSVPNTRQQTHNHN 127
           HD   + +  DLRP  + HKN+   +   PN      N N
Sbjct: 11  HDRGRRFDQTDLRPMAEPHKNVSRILGETPNMNHSGTNVN 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,329,663
Number of Sequences: 59808
Number of extensions: 254776
Number of successful extensions: 713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)