Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0471
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-21|CAB55087.1|  370|Caenorhabditis elegans Hypothetical...    60   1e-09
Z70270-6|CAA94226.2|  323|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AL009246-1|CAA15835.1|  281|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AC006661-9|AAF39885.1|  337|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AL117202-21|CAB55087.1|  370|Caenorhabditis elegans Hypothetical
           protein Y47D3A.27 protein.
          Length = 370

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
 Frame = +3

Query: 435 FNMKEELEEGHFDTQGHYHW-KKEKEIRDGWLDNIDWVKVKGRPEDKYKIHHSDEKGL 605
           FNMKE+ EEGHFD  G++ + KK K+++D WLD IDW  VK +  D+++    D+K L
Sbjct: 95  FNMKEDEEEGHFDETGNFIFDKKTKDVQDAWLDGIDWSLVKKKAGDQWE-GDEDKKSL 151


>Z70270-6|CAA94226.2|  323|Caenorhabditis elegans Hypothetical
           protein C53D6.4 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 175 SESDSTRLVHGWYLFLIVIVCLLPCVRYAINEINVFMSIKVWSQ 44
           +E    RLV+G Y+F  ++VCL   + +    I +   +  W Q
Sbjct: 234 TEITENRLVNGLYIFACLLVCLATFIYHVRERILLSAPVLQWFQ 277


>AL009246-1|CAA15835.1|  281|Caenorhabditis elegans Hypothetical
           protein C47F8.1 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 114 HTITIKKRYQPCTNLVESDSLNLSSPIQEKAPKILLGYF 230
           HT  ++  Y  CTN+ E D + +   ++++ P  L  YF
Sbjct: 94  HTFWVETVYLDCTNVEEGDVVKVVEYLKKEKPYYLKLYF 132


>Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical
           protein F54G8.3 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 312 RNVSCHPSWPFLLRLLMLRKRDAL 241
           RNV  H SWP+ LR    R ++AL
Sbjct: 863 RNVEAHISWPYQLRSRFGRGKNAL 886


>AC006661-9|AAF39885.1|  337|Caenorhabditis elegans Hypothetical
           protein H20J04.7 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -1

Query: 575 IFILWSTFYFNPVN-----VIKPSITNFFFFFPMVMSLCIKMPFF 456
           IFILW  F+ NP N         SI   F  FP+   +C  + ++
Sbjct: 183 IFILWLGFFENPWNGHGDIYSDKSIHRMFHLFPVASIICYMILYY 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,964,517
Number of Sequences: 27780
Number of extensions: 199457
Number of successful extensions: 667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)