Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0470
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    29   0.43 
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.3  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   9.2  

>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 496 CIVWCKDGCYYYDLKRLFIII 558
           C++WC D  +Y+ L  +F+II
Sbjct: 209 CVLWCLDDYWYFSLFSMFMII 229


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 640 PPRVFFFFFLMELRILFY-FINTTMNNNQ*L*ITFLNHSSNNHLYT 506
           PP VF  FF    R+ F+  I + +  N    + FL+H+S   L+T
Sbjct: 115 PPTVFLLFFKFYSRLFFFRIIPSHILYNSFRIVLFLSHASPAILHT 160


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 260 IPNSLKSSQYLR-SYLGLSEGITKKTCFNCLIRRELRPTDPYKSNCYR 120
           +P+    S Y+R +++G  E +    C N ++     P  PY S+ ++
Sbjct: 140 VPDQRGYSLYIRPTFIGTDEALGVHHCDNAMLYVIASPVGPYYSSGFK 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,574
Number of Sequences: 5004
Number of extensions: 43196
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)