Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0470
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           28   5.4  
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438...    28   7.2  
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173...    27   9.5  
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135     27   9.5  
01_05_0645 - 23899579-23904483                                         27   9.5  

>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 258 TKFIKIKPVFKKLSWIK*RNNEKDVFQLLDTSRV 157
           +KF+ I  VFK+L   K +N + D+  L +  R+
Sbjct: 616 SKFLSIDEVFKRLDEQKKKNEKPDLISLFEDQRI 649


>03_02_0838 +
           11641484-11642030,11643614-11643650,11643784-11643841,
           11646176-11646265,11646796-11646913,11648093-11648277,
           11648330-11648455,11648578-11648634,11648741-11648821,
           11649068-11649102,11649265-11649354,11649443-11649599,
           11649785-11649901
          Length = 565

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 368 GITYLKLTPRDLVY*IFF**S*K*DHFKG*IPNFKLIPNSL 246
           GI+    +PR ++  IFF  S   DHF+  I NF+L+P  +
Sbjct: 493 GISVALSSPRLVIPAIFFGLSTLSDHFQNSILNFELVPGMM 533


>09_06_0001 +
           20114108-20115686,20115813-20115928,20116416-20117394,
           20118820-20119082
          Length = 978

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 258 TKFIKIKPVFKKLSWIK*RNNEKDVFQLLDTSRV 157
           +KF+ I  VFK+L+  K +N + D+  L +  ++
Sbjct: 650 SKFLSIDEVFKRLNEQKKKNEKPDLISLFEDQKI 683


>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
          Length = 1275

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 258  TKFIKIKPVFKKLSWIK*RNNEKDVFQLLDTSRV 157
            +KF+ I  VFK+L   K +N + D+  L +  ++
Sbjct: 935  SKFLSIDEVFKRLDEQKKKNEQPDLISLFEDQKI 968


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 258 TKFIKIKPVFKKLSWIK*RNNEKDVFQLLDTSRV 157
           +KF+ I  VFK+L   K +N + D+  L +  ++
Sbjct: 855 SKFLSIDEVFKRLDEQKKKNEQPDLISLFEDQKI 888


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,090,191
Number of Sequences: 37544
Number of extensions: 223813
Number of successful extensions: 382
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)