Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0470
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18293| Best HMM Match : TPK_B1_binding (HMM E-Value=1e-24)          29   3.2  
SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24)          28   7.4  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_21302| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-27)         27   9.7  
SB_11613| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_18293| Best HMM Match : TPK_B1_binding (HMM E-Value=1e-24)
          Length = 262

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -1

Query: 502 QYNLHHTQPQIFSVILVNN*TIGLGLINYVTSKALMTYTFASKS-LES 362
           ++NL H+  +  S+I  +N   G GL+N  T++ L+ +T   KS LES
Sbjct: 209 KWNLEHSTLEFGSLISTSNMLDGTGLVNIETNETLL-WTIGIKSCLES 255


>SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24)
          Length = 364

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 72  PRYVPVNV*KS-TDKENPITVAFIGVSRPQLATYQAI 179
           P+Y+ VN+  S TD     T  +IG +RP L   +AI
Sbjct: 158 PKYIRVNIKASKTDPFRKGTFIYIGKARPPLCAVEAI 194


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 583  INTTMNNNQ*L*ITFLNHSSNNHLYTTQYNLHHTQPQIFSVIL 455
            I   +N++  L ITF+ +    HL + + N  H Q   FSV++
Sbjct: 2098 IEIRINDDDSLGITFVPYEPGEHLISIKKNGRHVQNSPFSVMV 2140


>SB_21302| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-27)
          Length = 1290

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 200 ITKKTCFNCLIRRELRPTDPYKSNCYR 120
           + +K CFNC  R+        KSNC++
Sbjct: 323 VKEKLCFNCTKRKHRAEECKSKSNCFK 349


>SB_11613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 604 LRILFYFINTTMNNNQ*L*ITFLNHSSNNHLYTTQYNLHHTQPQIFSVI 458
           + I+   I TT+N         L+H  N+H +   ++ HH QP I  +I
Sbjct: 30  ITIIIVIITTTINQPS------LSHHHNHHRHHHHHHHHHHQPTITIII 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,197,743
Number of Sequences: 59808
Number of extensions: 295665
Number of successful extensions: 642
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)