Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0470
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z75713-3|CAB54301.1|  419|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z75713-2|CAB00051.2|  422|Caenorhabditis elegans Hypothetical pr...    27   8.6  
X51321-1|CAA35704.1|  422|Caenorhabditis elegans hypothetical pr...    27   8.6  
U53149-4|AAA96120.1|  956|Caenorhabditis elegans Patched related...    27   8.6  
AC006629-9|ABC48255.1|  319|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical
           protein C06A8.6 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 482 TTTDFFCYLS**LDNWSRLDQLCDIKSIDDLYI 384
           T TDF+   +  LDNWS +D+L ++  ++ +Y+
Sbjct: 253 TLTDFWARGNK-LDNWSIMDELVELPQLNSVYL 284


>Z75713-3|CAB54301.1|  419|Caenorhabditis elegans Hypothetical
           protein T01G9.2b protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 640 PPRVFFFFFLMELRILFYFIN 578
           PP  FF +F+M L ILF F++
Sbjct: 296 PPNFFFNYFVMGLDILFDFVS 316


>Z75713-2|CAB00051.2|  422|Caenorhabditis elegans Hypothetical
           protein T01G9.2a protein.
          Length = 422

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 640 PPRVFFFFFLMELRILFYFIN 578
           PP  FF +F+M L ILF F++
Sbjct: 299 PPNFFFNYFVMGLDILFDFVS 319


>X51321-1|CAA35704.1|  422|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 422

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 640 PPRVFFFFFLMELRILFYFIN 578
           PP  FF +F+M L ILF F++
Sbjct: 299 PPNFFFNYFVMGLDILFDFVS 319


>U53149-4|AAA96120.1|  956|Caenorhabditis elegans Patched related
           family protein 1 protein.
          Length = 956

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 166 VASCGLLTPIKATVIGFSL 110
           VA+ GL+TPI ATV  F L
Sbjct: 327 VAAAGLMTPIMATVTSFGL 345


>AC006629-9|ABC48255.1|  319|Caenorhabditis elegans Hypothetical
           protein F12E12.10 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 431 RLDQLCDIKSIDDLYIREQKFGITYLKL 348
           R+  LCD+  +DD ++R+   G +Y K+
Sbjct: 124 RIHFLCDLDLLDDRFLRDHLSGFSYHKV 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,374,674
Number of Sequences: 27780
Number of extensions: 231957
Number of successful extensions: 494
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)