Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0470
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    26   0.35 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.1  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    23   3.3  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 607 ELRILFYFINTTMNNNQ*L*ITFLNHSSNNHLYTTQYN 494
           E +I+    N T++NN      + N++ NN+ Y   YN
Sbjct: 311 EPKIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYN 348


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 607 ELRILFYFINTTMNNNQ*L*ITFLNHSSNNHLYTTQYNLHHTQ 479
           E +I+    N T++NN      + N++ NN+     YN+++ +
Sbjct: 78  EPKIISSLSNRTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIE 120


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 607 ELRILFYFINTTMNNNQ*L*ITFLNHSSNNHLYTTQYNLHHTQ 479
           E +I+    N T++NN      + N++ NN+     YN+++ +
Sbjct: 78  EPKIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIE 120


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 607 ELRILFYFINTTMNNNQ*L*ITFLNHSSNNHLYTTQYNLHHTQ 479
           E +I+    N T++NN      + N++ NN+     YN+++ +
Sbjct: 78  EPKIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIE 120


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 607 ELRILFYFINTTMNNNQ*L*ITFLNHSSNNHLYTTQYNLHHTQ 479
           E +I+    N T++NN      + N++ NN+     YN+++ +
Sbjct: 78  EPKIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIE 120


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 622 FFFLMELRILFYFINTTMN 566
           FFFL  + I  YF+  TM+
Sbjct: 9   FFFLSVILITSYFVTPTMS 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,647
Number of Sequences: 438
Number of extensions: 3107
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)