Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0470
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42570.1 68415.m05268 expressed protein                             29   2.6  
At4g32250.2 68417.m04589 protein kinase family protein contains ...    28   6.0  
At4g32250.1 68417.m04588 protein kinase family protein contains ...    28   6.0  
At3g27470.1 68416.m03433 expressed protein contains Pfam profile...    27   7.9  

>At2g42570.1 68415.m05268 expressed protein
          Length = 367

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 640 PPRVFFFFFLMELRILFYFINTTMNNN 560
           P  +FFFFF + L  +  +IN+T +NN
Sbjct: 9   PSFLFFFFFFLCLSTVSAYINSTSSNN 35


>At4g32250.2 68417.m04589 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 611

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 51  KVKGQK*PRYVPVNV*KSTDKENPITVAFIGV 146
           ++K +K  R+ PV V  S D+E  + V FIG+
Sbjct: 415 RLKVRKDKRHSPVGVLHSIDREGNVAVGFIGL 446


>At4g32250.1 68417.m04588 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 611

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 51  KVKGQK*PRYVPVNV*KSTDKENPITVAFIGV 146
           ++K +K  R+ PV V  S D+E  + V FIG+
Sbjct: 415 RLKVRKDKRHSPVGVLHSIDREGNVAVGFIGL 446


>At3g27470.1 68416.m03433 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 398

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 151 LLTPIKATVIGFSLSVDFHTLTGTYLGYF*PFTLYDNWDNTY 26
           LLT     ++GF + + F TLT T +    P TL+ + D  Y
Sbjct: 11  LLTSFFGVIVGFLMGITFPTLTLTKMNL--PSTLFPSIDLAY 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,375,942
Number of Sequences: 28952
Number of extensions: 207239
Number of successful extensions: 451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)