Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0468
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    50   2e-07
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    34   0.015
SPBC21H7.06c |||inositol metabolism protein Opi10 |Schizosacchar...    29   0.58 
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    26   3.1  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   4.1  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   7.1  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    25   7.1  

>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
 Frame = +1

Query: 205 VVRVCEPSYDTAPLKAENIEVRDLAYDDGTFPPANVVDDWFEILRDKAENKPESAVAVHC 384
           +VR+  P YD    +   I  +++ ++DGT P  ++V ++ ++  +  E   +  +AVHC
Sbjct: 230 IVRLNGPLYDKKTFENVGIRHKEMYFEDGTVPELSLVKEFIDLTEEVEE---DGVIAVHC 286

Query: 385 VAGLGRAPVMVAIALI-ELGMKYEEAVETIRDQRRGAINAKQLSYL 519
            AGLGR   ++   LI +      E +  +R  R G +   Q  +L
Sbjct: 287 KAGLGRTGCLIGAYLIYKHCFTANEVIAYMRIMRPGMVVGPQQHWL 332


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 33.9 bits (74), Expect = 0.015
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +1

Query: 370 VAVHCVAGLGRAPVMVAIALI-ELGMKYEEAVETIRDQRRG-AINAKQLSYLEKY 528
           V VHC AG+ R+  +VA  L+ E     EEA+  I ++R G + NA  L  L  Y
Sbjct: 127 VLVHCFAGISRSVTLVAAYLMKENNWNTEEALSHINERRSGISPNANFLRQLRVY 181


>SPBC21H7.06c |||inositol metabolism protein Opi10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 226 SYDTAPLKAENIEVRDLAYDDGTFPPANVVDDWFEILRDKAENKP 360
           S+ T+ L   +I + DL  +D TF P  V  DW     +K  N P
Sbjct: 148 SFATSQLPPNSIGLGDLRPND-TFIPLRVFQDWHAKFLNKLSNNP 191


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 259 IEVRDLAYDDGTFPPANVVDDWFEILR 339
           +EV D A       P N +DDW+ ILR
Sbjct: 62  LEVGDFAGISLWMGPGNNMDDWYSILR 88


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 392 PATQCTATADSGLFSALSLRISNQSSTTLAGGKVPSS 282
           PAT    TAD       S    N+S   L+  KVPSS
Sbjct: 146 PATNANFTADFESSIEESYSTENKSPVILSSSKVPSS 182


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 340 DKAENKPESAVAVHCVAGLGRAPVMVAI 423
           DK  N  +  + VHC AG+GR    +A+
Sbjct: 618 DKVPN--DGPMFVHCSAGVGRTGTFIAV 643


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 364 SAVAVHCVAGLGRAPVMVAIALIELGMKYEEAVETIRD 477
           S + +  + G   A ++ A A  E+ ++  E +ETIRD
Sbjct: 272 STINIGTIEGGAAANILAAEAKAEVFIRVAEDIETIRD 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,421
Number of Sequences: 5004
Number of extensions: 29209
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)