Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0468
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0339 + 2603351-2603891,2604048-2604226 38 0.007
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379... 37 0.009
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678 34 0.083
01_06_0649 + 30861946-30862179,30862702-30862824,30863104-308631... 32 0.33
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 31 0.58
12_01_0078 - 639421-639624,639706-639876,640392-640597,640985-64... 31 0.77
11_01_0077 - 602192-602395,602477-602647,603161-603366,605457-60... 30 1.0
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571... 30 1.0
08_02_1324 - 26144058-26144078,26145081-26145778,26145861-26145936 29 2.4
10_08_0004 + 14022511-14022670,14022740-14023049,14023193-140234... 29 3.1
04_04_0055 + 22403608-22403865,22403977-22404075,22404172-224042... 29 3.1
10_01_0141 - 1686827-1687063,1687160-1687315,1688046-1688974,168... 28 4.1
05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571 28 4.1
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708 28 5.4
09_02_0447 + 9452850-9454121,9454299-9454325 27 7.2
08_01_0625 + 5444547-5444912 27 7.2
10_08_0628 + 19389508-19389637,19389774-19389850,19390332-193904... 27 9.5
08_01_0874 + 8575718-8576422,8576603-8576662,8576799-8576945,857... 27 9.5
03_05_0362 + 23455372-23455619,23456570-23456966,23457400-23457561 27 9.5
>12_01_0339 + 2603351-2603891,2604048-2604226
Length = 239
Score = 37.5 bits (83), Expect = 0.007
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Frame = +1
Query: 343 KAENKPESAVAVHCVAGLGRAPVMVAIALIELGM--KYEEAVETIRDQRR---GAINAKQ 507
+A+ KP V VHC G GR+ +V L+ LG+ +++A IR++R+ A++ K
Sbjct: 168 RAKGKP---VYVHCAFGHGRSACVVCAVLVALGIAENWKDAENIIREKRKIKMNAVHRKT 224
Query: 508 LSYLEKYR 531
L KYR
Sbjct: 225 LDDWSKYR 232
>12_01_0482 -
3791630-3791698,3791983-3792124,3792202-3792344,
3792833-3792958,3794307-3794444,3794540-3794622,
3794738-3794825,3796147-3796344
Length = 328
Score = 37.1 bits (82), Expect = 0.009
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Frame = +1
Query: 265 VRDLAYDDGTFPPANVVDDWFEILRDKAENKP-ESAVAVHCVAGLGRAPVMVAI-ALIE- 435
VR + Y D D +R +N P E + VHC AG+GR + I + IE
Sbjct: 218 VRHIEYPDWPDHGVPTNTDAVRQIRKWLQNTPMEHPIVVHCSAGIGRTGAYITIHSTIER 277
Query: 436 --LGMK----YEEAVETIRDQRRGAINAKQLSYLEKYR 531
LG K +E V+T+R QR G + ++ Y+ YR
Sbjct: 278 LLLGDKSSYHLDETVKTLRTQRVGMVQTEK-QYMFCYR 314
>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
Length = 261
Score = 33.9 bits (74), Expect = 0.083
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Frame = +1
Query: 334 LRDKAENKPESAVAVHCVAGLGRAPVMVAIALIELGM--KYEEAVETIRDQRRG-AINAK 504
LR +++NK AV VHC G GR+ ++ L+ LG+ ++ A + IR++R ++N+
Sbjct: 166 LRKRSQNK---AVYVHCAYGHGRSVCVMCALLVALGLAEDWKAAEQMIREKRPSISMNSL 222
Query: 505 QLSYLEKY 528
LE++
Sbjct: 223 HRKSLEEW 230
>01_06_0649 +
30861946-30862179,30862702-30862824,30863104-30863197,
30863819-30863901,30863984-30864073,30864176-30864562,
30864903-30864991,30867801-30867907,30868431-30868822
Length = 532
Score = 31.9 bits (69), Expect = 0.33
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Frame = +1
Query: 145 PSDVSIQAYLQELRKHNFCTVVRVCEPSYDTAPLKAENIEVRDLAYDDGTFPPANVVDDW 324
PSDV L++L T+ E T+ +A I+ + D F PA + D
Sbjct: 88 PSDVP---RLKQLGVQGVVTLNEAYETLVPTSLYQAHGIDHLIIPTRDYLFAPA--LQDI 142
Query: 325 FEILRDKAENKPESAVA-VHCVAGLGRAPVMVAIALIEL-GMKYEEAVETIRDQR 483
+ + N E + VHC AG GR+ +V LI+ M E A++ +R R
Sbjct: 143 CQAIDFIHRNASEGGITYVHCKAGRGRSTTIVLCYLIKYRSMSPEAALDHVRSIR 197
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 31.1 bits (67), Expect = 0.58
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = -2
Query: 176 CRYA*MDTSDGRSVMRKRIPLYSMREGAGLMSFCFMVTAASLLLGEIEAGSGSHFRTR 3
C A +DT+DG + ++++PL R G G F AAS LG G+ H R R
Sbjct: 376 CVAALLDTNDG-TCTKQQLPLRYGRAGGGYTMFVKTGGAASPALGGGGGGNHHHHRLR 432
>12_01_0078 -
639421-639624,639706-639876,640392-640597,640985-641100,
641669-641855,642104-642338
Length = 372
Score = 30.7 bits (66), Expect = 0.77
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 346 AENKPESAVAVHCVAGLGRAP-VMVAIALIELGMKYEEAVETIRDQR 483
A ++ + V VHC AGLGRAP V +A M + A E + +R
Sbjct: 271 AISEGKGRVYVHCTAGLGRAPAVAIAYMFWFENMNLKTAYEKLTSKR 317
>11_01_0077 -
602192-602395,602477-602647,603161-603366,605457-605682
Length = 268
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 346 AENKPESAVAVHCVAGLGRAPVMVAIA 426
A ++ + V VHC AGLGRAP VAIA
Sbjct: 167 AISEGKGRVYVHCTAGLGRAPA-VAIA 192
>06_03_0436 + 20755816-20756025,20756124-20756240,20756942-20757137,
20757393-20757544,20757653-20757736,20757848-20757925,
20757958-20758116,20758219-20758251,20759119-20759826,
20759917-20759998,20760093-20760449,20760586-20760692,
20760796-20761001,20761480-20761623,20761715-20761800,
20762120-20762283,20762559-20763119
Length = 1147
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +1
Query: 274 LAYDDGTFPPANVVDDWFEILRDKAENKPESAVAVHCVAGLGRAPVMVAIALIEL--GMK 447
LA D T P N D E++R EN+ A A++ + + V + I ++L G+
Sbjct: 835 LAVPDATMHPVNSSSDVIELMRTGLENRSVGATALNERSSRSHSVVTMHIQGVDLKTGVT 894
Query: 448 YEEAVETIRDQRRGAINAKQLSYLE 522
A+ + G+ NAK L +++
Sbjct: 895 LRGALHLV--DLAGSGNAKTLMFVQ 917
>08_02_1324 - 26144058-26144078,26145081-26145778,26145861-26145936
Length = 264
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 391 GLGRAPVMVAIALIELGMKYEEAVETIRDQRRGAINAKQLSYL 519
GLGR V +A+ LG Y + RD GA+ L +L
Sbjct: 158 GLGRVKVGTTLAMDALGTSYPPSAGAFRDDIAGAVVRPLLEFL 200
>10_08_0004 +
14022511-14022670,14022740-14023049,14023193-14023414,
14023497-14023721,14024045-14024119,14024619-14024754,
14025124-14025251,14025337-14025419,14025505-14025626,
14025732-14025810,14026252-14026420,14026562-14026622,
14026729-14026851,14027675-14027914,14028045-14028113,
14028353-14028429,14028527-14028593
Length = 781
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 398 PSPATQCTATADSGLFSALSLRISNQSSTTLAGGKVP 288
PSP+ + +A FS L + ISN S+ G K+P
Sbjct: 482 PSPSDKISAILADHKFSILKIPISNSSNKLADGAKLP 518
>04_04_0055 +
22403608-22403865,22403977-22404075,22404172-22404213,
22404350-22404479,22405118-22405219,22405960-22406066
Length = 245
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 138 GDEEAHPLVLDEGRRRSNVLLLHGHR 61
G+E A P EG RR L LHG R
Sbjct: 6 GEEGARPAAAAEGARRPRFLCLHGFR 31
>10_01_0141 -
1686827-1687063,1687160-1687315,1688046-1688974,
1689595-1689640,1689914-1689932,1690751-1690962,
1691063-1691218,1692240-1693184,1693448-1693597
Length = 949
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 102 PHRVQGDALPHHRPPIGRVHSGVSAGVEEAQLLHGGARVRAELR 233
P +V DA P PP+ R S VSA ++ H RV+A +R
Sbjct: 43 PRQVPTDAFPR-APPVRRNASSVSATMDRRPGRHKLRRVKAHVR 85
>05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571
Length = 527
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +1
Query: 253 ENIEVRDLAYDDGTFP-----PANVVDDWFEILRDKAENKPESAVAVHCVAGLGRAPVMV 417
E ++ +AY G FP A +DD +++ AE + + + VH +A +
Sbjct: 426 EQVKASGVAYQVGKFPLLANSRAKAIDDAEGLVKVVAEKETDRILGVHIMAPNAGEIIHE 485
Query: 418 AIALIELGMKYEEAVET 468
A+ ++ G E+ T
Sbjct: 486 AVLALQYGASSEDIART 502
>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
Length = 2033
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 74 FMVTAASLLLGEIEAGSGSHF 12
F + S+++G+I AG GSHF
Sbjct: 460 FSIRRRSIIVGQITAGDGSHF 480
>09_02_0447 + 9452850-9454121,9454299-9454325
Length = 432
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 168 RLNGHVRWAVGDEEAHPLVLDE 103
R NG + W + +E+ LVLDE
Sbjct: 262 RANGRIYWGIDNEDGATLVLDE 283
>08_01_0625 + 5444547-5444912
Length = 121
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1
Query: 111 LDEGRRRSNVLLLHGHRCFSS 49
L+ RRS VLLL RCFSS
Sbjct: 55 LNRSARRSRVLLLPPRRCFSS 75
>10_08_0628 +
19389508-19389637,19389774-19389850,19390332-19390438,
19390545-19390626,19390702-19390814,19391023-19391086,
19391192-19391266,19391691-19391807,19392131-19392199,
19392319-19392411,19392733-19392835,19393040-19393164,
19393317-19393366,19393477-19393543,19393663-19393742,
19394038-19394166,19394274-19394340,19394429-19394512
Length = 543
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 202 CKSCASSTPADTPEWTRPMGG 140
CK+C P EWT P GG
Sbjct: 515 CKACDIKDPKQNIEWTVPEGG 535
>08_01_0874 +
8575718-8576422,8576603-8576662,8576799-8576945,
8577390-8577527
Length = 349
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 371 TADSGLFSALSLRISNQSSTTLAGGKVPSS*ARSRTSMFSAFSGAVS 231
TA L L R+++ +L+GG PSS S S+ S ++S
Sbjct: 101 TAGQDLLDHLKERVNSSRKRSLSGGSSPSSSNTSSAGSLSSSSRSIS 147
>03_05_0362 + 23455372-23455619,23456570-23456966,23457400-23457561
Length = 268
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 401 RPSPATQCTATADSGLFSALSLRISNQSSTTLAGGKV 291
R P T T GL LSL +S+Q ++AGGK+
Sbjct: 66 RGGPEASPTVTTTMGL-GRLSLSVSDQRVRSIAGGKL 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,825,760
Number of Sequences: 37544
Number of extensions: 257395
Number of successful extensions: 999
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -