Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0468
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   4.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 120 PLVLDEGRRRSNVLLLHGHRCFSSAGRDRSRLGQSLPH 7
           P+    G+  +N   LH   C S +   +SRL + L H
Sbjct: 116 PVCASNGKIYANHCELHRAACHSGSSLTKSRLMRCLHH 153


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 322 WFEILRDKAENKPESAVAVHCVA 390
           WFEI RD    K     A  C A
Sbjct: 31  WFEIWRDSLPTKMRELNATACAA 53


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 392 PATQCTATADSGLFSALSLRISNQSSTTLAGGKVPSS*ARSRTSM 258
           P +  T      +   +  RIS++S+ +LAGG       R R ++
Sbjct: 436 PGSMPTMPTMPSMAGPIRRRISDKSALSLAGGLYDEGTVRRRVAV 480


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
 Frame = -2

Query: 404 ARPSPATQC------TATADSGLFSALSLRISNQSST 312
           A PSPA QC      TA +  G    L    SN S+T
Sbjct: 743 ASPSPAEQCASTTTITARSPQGSQGLLQCATSNYSTT 779



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 229 YDTAPLKAENIEVRDLAYDDGTFPPANVVDD 321
           Y  AP  +EN+  R LA  DGT     V  D
Sbjct: 42  YRGAPQDSENLLGRVLAEFDGTTVLCRVCGD 72


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 289 GTFPPANVVDDWFEIL 336
           G FPP ++ D W  +L
Sbjct: 343 GRFPPQSLTDMWLTML 358


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 183 QLLQIRLNGHVRWAVGDEEAHPLVL 109
           QLL   +NG     +GD E   L++
Sbjct: 189 QLLSCEVNGSTLVYIGDNEGFALII 213


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 289 GTFPPANVVDDWFEIL 336
           G FPP ++ D W  +L
Sbjct: 311 GRFPPQSLTDMWLTML 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,411
Number of Sequences: 438
Number of extensions: 2091
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)