Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0467
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 417 e-118
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 250 1e-67
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 234 7e-63
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 157 2e-39
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 94 1e-20
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 79 7e-16
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 76 5e-15
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 71 1e-13
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 54 2e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.003
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 3.2
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.2
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 9.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 417 bits (1026), Expect = e-118
Identities = 197/220 (89%), Positives = 208/220 (94%)
Frame = +1
Query: 1 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVL 180
LRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN+PA YVAIQAVLSLYASGRTTGIVL
Sbjct: 94 LRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVL 153
Query: 181 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK 360
DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIK
Sbjct: 154 DSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIK 213
Query: 361 EKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG 540
EKLCYVALDFEQE+ TAA S+SLEKSYELPDGQVITIGNERFR PEALFQPS LG+E+ G
Sbjct: 214 EKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAG 273
Query: 541 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRM 660
IHE YNSIMKCDVDIRKDLY N VMSGGTTMYPGIADRM
Sbjct: 274 IHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRM 313
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 250 bits (613), Expect = 1e-67
Identities = 114/220 (51%), Positives = 157/220 (71%)
Frame = +1
Query: 1 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVL 180
L++ P +LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+
Sbjct: 94 LKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVV 153
Query: 181 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK 360
DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR++K
Sbjct: 154 DSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMK 213
Query: 361 EKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG 540
EKLCYV+ D E + + +T L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G
Sbjct: 214 EKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPG 273
Query: 541 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRM 660
+ E ++++I DVDIRK LY V+SGG++MY G+ R+
Sbjct: 274 LSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRL 313
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 234 bits (573), Expect = 7e-63
Identities = 106/219 (48%), Positives = 151/219 (68%)
Frame = +1
Query: 1 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVL 180
L PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL
Sbjct: 99 LNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVL 158
Query: 181 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK 360
+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR+IK
Sbjct: 159 ECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIK 218
Query: 361 EKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG 540
EK CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G E+ G
Sbjct: 219 EKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASG 278
Query: 541 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 657
+H ++ SI+ D+D+R LY+N V+SGG+T+ G +R
Sbjct: 279 LHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGER 317
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 157 bits (380), Expect = 2e-39
Identities = 94/235 (40%), Positives = 131/235 (55%), Gaps = 15/235 (6%)
Frame = +1
Query: 1 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT----- 165
LR PE+H LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS +
Sbjct: 117 LRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTD 176
Query: 166 ---TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTT 330
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S T
Sbjct: 177 RSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKT 236
Query: 331 AEREIVRDIKEKLCYVALDFEQEMA--TAAASTSLEKSYELPDGQ--VITIGNERFRCPE 498
AER IKE+ CYV D +E + L+ + E G I +G ERF PE
Sbjct: 237 AER-----IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPE 291
Query: 499 ALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRM 660
F P + + E V N + +D+RK LY N V+SGG+T++ +R+
Sbjct: 292 IFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRL 346
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 94.3 bits (224), Expect = 1e-20
Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 20/183 (10%)
Frame = +1
Query: 172 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 351
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 352 DIKEKLCYVALDFEQEMATA--AASTSLEKSYELPD------------------GQVITI 471
+IKE +CYV+ +F+++M + LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 472 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 651
NERF PE LF PS + + GI E V S+ +I+ L N V GG +PG
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFH 336
Query: 652 DRM 660
R+
Sbjct: 337 KRL 339
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 78.6 bits (185), Expect = 7e-16
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
Frame = +1
Query: 316 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 495
S+ +R ++ + KE + V + A AS+ K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299
Query: 496 EALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 648
E LF PSF S G+HE VY SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 649 ADRM 660
++R+
Sbjct: 360 SERL 363
Score = 62.5 bits (145), Expect = 5e-11
Identities = 29/107 (27%), Positives = 57/107 (53%)
Frame = +1
Query: 1 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVL 180
L+V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++
Sbjct: 95 LQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIV 154
Query: 181 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 321
D G + P+ +G + I + LAG L + ++ F
Sbjct: 155 DIGSDNASVTPVVDGLIIRKGIFKQSLAGDFLNANIEQLFNTMNIEF 201
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 75.8 bits (178), Expect = 5e-15
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 2/141 (1%)
Frame = +1
Query: 19 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGR--TTGIVLDSGD 192
EHP+ +TE NP R MT+++FE +N+P++ I + S Y + + ++GIVL+ G+
Sbjct: 115 EHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGN 174
Query: 193 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 372
SH +P+ G + R+ G + YL+K+ + SF + C
Sbjct: 175 AASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHC 234
Query: 373 YVALDFEQEMATAAASTSLEK 435
+V+ D+ ++A A LE+
Sbjct: 235 HVSSDYTHDIAHALDRDILER 255
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/61 (29%), Positives = 37/61 (60%)
Frame = +1
Query: 478 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 657
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 658 M 660
+
Sbjct: 654 I 654
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 70.9 bits (166), Expect = 1e-13
Identities = 36/105 (34%), Positives = 55/105 (52%)
Frame = +1
Query: 1 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVL 180
L+ P EHP+L+TE NP NR K + MFE+ PA Y+A Q + +ASG+ T ++
Sbjct: 92 LKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLV 151
Query: 181 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 315
D G S IY+G+ L +G + D L + L ++ +
Sbjct: 152 DIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
Score = 39.1 bits (87), Expect = 6e-04
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 538 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRM 660
GI + N I +CDVDIR L N ++ GGT++ G + R+
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRL 366
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 53.6 bits (123), Expect = 2e-08
Identities = 34/114 (29%), Positives = 53/114 (46%)
Frame = +1
Query: 22 HPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 201
+PV L +RE TQ FE P +A + ++ LYA G G+V+D G +
Sbjct: 147 YPVCLVIPTYWSLYDRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKT 206
Query: 202 HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE 363
PI +G + A +L L GR +T +L +L E + ++ + DI E
Sbjct: 207 DITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/101 (18%), Positives = 48/101 (47%)
Frame = +1
Query: 19 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 198
++ V+ L + EK+ I+F + + +++ + + +G + V+D G
Sbjct: 243 QYSVIFIVPDLYDRVYVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQK 302
Query: 199 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 321
+ + EG +P++ ++++ G D+T MK+L + +
Sbjct: 303 TSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 215 STKVTLCPTPSSVWTW 262
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 31 LLTEAPLNPKANREKMTQIMFETFN 105
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 216 LRRLRSAPRHPPSGLGWSRLDRLPHED 296
L++ + +H G WS LDR H+D
Sbjct: 254 LKKSKRVKKHDYGGEDWSLLDRKFHDD 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,136
Number of Sequences: 5004
Number of extensions: 43165
Number of successful extensions: 178
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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