Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0467
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 444 e-125
SB_56| Best HMM Match : Actin (HMM E-Value=0) 443 e-125
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 442 e-125
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 441 e-124
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 390 e-109
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 339 1e-93
SB_54| Best HMM Match : Actin (HMM E-Value=0) 296 1e-80
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 259 1e-69
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 206 1e-53
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 171 3e-43
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 149 2e-36
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 110 8e-25
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 89 4e-18
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 71 8e-13
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 38 0.010
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 38 0.010
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5) 32 0.36
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 32 0.36
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 1.1
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 29 3.4
SB_55729| Best HMM Match : YajC (HMM E-Value=0.56) 29 4.4
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 7.7
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 444 bits (1093), Expect = e-125
Identities = 210/220 (95%), Positives = 217/220 (98%)
Frame = +1
Query: 1 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVL 180
LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+
Sbjct: 95 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 154
Query: 181 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK 360
DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK
Sbjct: 155 DSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK 214
Query: 361 EKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG 540
EKLCYVALDFEQEM TAA+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES G
Sbjct: 215 EKLCYVALDFEQEMTTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAG 274
Query: 541 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRM 660
IHET YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIADRM
Sbjct: 275 IHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRM 314
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 443 bits (1092), Expect = e-125
Identities = 210/220 (95%), Positives = 217/220 (98%)
Frame = +1
Query: 1 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVL 180
LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+
Sbjct: 94 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 153
Query: 181 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK 360
DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK
Sbjct: 154 DSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK 213
Query: 361 EKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG 540
EKLCYVALDFEQEM TAA+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES G
Sbjct: 214 EKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAG 273
Query: 541 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRM 660
IHET YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIADRM
Sbjct: 274 IHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRM 313
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 442 bits (1090), Expect = e-125
Identities = 209/220 (95%), Positives = 217/220 (98%)
Frame = +1
Query: 1 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVL 180
LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+
Sbjct: 95 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 154
Query: 181 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK 360
DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK
Sbjct: 155 DSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK 214
Query: 361 EKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG 540
EKLCYVALDFEQEM TAA+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES G
Sbjct: 215 EKLCYVALDFEQEMETAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAG 274
Query: 541 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRM 660
IHET YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIADRM
Sbjct: 275 IHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRM 314
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 441 bits (1087), Expect = e-124
Identities = 210/220 (95%), Positives = 217/220 (98%)
Frame = +1
Query: 1 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVL 180
LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+
Sbjct: 94 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 153
Query: 181 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK 360
DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK
Sbjct: 154 DSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK 213
Query: 361 EKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG 540
EKL YVALDFEQEMATAAAS+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES G
Sbjct: 214 EKLAYVALDFEQEMATAAASSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAG 273
Query: 541 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRM 660
IHET YNSIMKCDVDIRKDLYANTV+SGG+TM+PGIADRM
Sbjct: 274 IHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRM 313
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 390 bits (959), Expect = e-109
Identities = 184/199 (92%), Positives = 193/199 (96%)
Frame = +1
Query: 64 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 243
N + M +IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 244 ILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAST 423
I+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S+
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSS 197
Query: 424 SLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLY 603
SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLY
Sbjct: 198 SLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLY 257
Query: 604 ANTVMSGGTTMYPGIADRM 660
ANTV+SGGTTMYPGIADRM
Sbjct: 258 ANTVLSGGTTMYPGIADRM 276
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 339 bits (833), Expect = 1e-93
Identities = 175/220 (79%), Positives = 182/220 (82%)
Frame = +1
Query: 1 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVL 180
LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+
Sbjct: 95 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 154
Query: 181 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK 360
DS G + H + I ERGYSFTTTAEREIVRDIK
Sbjct: 155 DS------------GDGVSHTV---------------PIYEERGYSFTTTAEREIVRDIK 187
Query: 361 EKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG 540
EKLCYVALDFEQEM TAA+S+S+EKSYELPDGQVITIGNERFRCPEAL QPSFLGMES G
Sbjct: 188 EKLCYVALDFEQEMQTAASSSSIEKSYELPDGQVITIGNERFRCPEALLQPSFLGMESSG 247
Query: 541 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRM 660
IHET YNSIMKCDVDIRKDLYANTVMSGGTTMYPG+ADRM
Sbjct: 248 IHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYPGLADRM 287
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 296 bits (726), Expect = 1e-80
Identities = 134/208 (64%), Positives = 166/208 (79%)
Frame = +1
Query: 1 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVL 180
LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LYASGRTTG V
Sbjct: 2139 LRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALYASGRTTGTVF 2198
Query: 181 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK 360
D GDGVSHTVP+Y+GY LPHA R+DLAGRDLT YL +++TERGYSF +TAE++I+RD+K
Sbjct: 2199 DCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQSTAEQQIIRDLK 2258
Query: 361 EKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG 540
E LCY A+D+E+E+ A S E Y LPDGQ I IG+ERFR E LFQPS LG + G
Sbjct: 2259 ETLCYCAMDYERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRDIDG 2318
Query: 541 IHETVYNSIMKCDVDIRKDLYANTVMSG 624
IHE+++ SI KCD+D+R +L+ N V+SG
Sbjct: 2319 IHESIFKSIKKCDIDLRAELFHNIVLSG 2346
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 259 bits (635), Expect = 1e-69
Identities = 115/220 (52%), Positives = 155/220 (70%)
Frame = +1
Query: 1 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVL 180
+ + P VLLTE PLNP NREKM ++MFE + +Y+AIQAVL+LYA G TG+V+
Sbjct: 98 MNIDPRNTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVI 157
Query: 181 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK 360
DSGDGV+H P+YEG+ALPH RLD+AGRD+T YL+K++ RGY+F TA+ E VR +K
Sbjct: 158 DSGDGVTHICPVYEGFALPHLTRRLDIAGRDITKYLIKLMLLRGYAFNHTADFETVRMMK 217
Query: 361 EKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG 540
EKLCYV + EQE A +T L + Y LPDG+V+ + ERF PEALFQP + +E G
Sbjct: 218 EKLCYVGYNIEQEQKLALETTVLVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEGVG 277
Query: 541 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRM 660
+ E ++N+I D+D R + Y + V+SGG+TMYPG+ R+
Sbjct: 278 VAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRL 317
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 206 bits (503), Expect = 1e-53
Identities = 97/106 (91%), Positives = 102/106 (96%)
Frame = +1
Query: 85 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 264
IMFE FNSPA+YVAIQAVLSLYASGRTTG+V DSGDGVSH VPIYEGYALPHAILRLDLA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 265 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 402
GRDLTDYLMK++TERGYSFTTTAEREIVRDIKEKLCYVALDF QE+
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLCYVALDFYQEI 106
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 171 bits (417), Expect = 3e-43
Identities = 74/116 (63%), Positives = 101/116 (87%)
Frame = +1
Query: 19 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 198
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD+GDGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 199 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 366
SH+VPIYEG+A+PH+I+R D+AGRD++ YL +L + G+ F +++E EIVR IKE+
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE 241
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +1
Query: 541 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPG 645
I E + +I K D+D+R+ LY+N V+SGG+T++ G
Sbjct: 257 IIEVLAFAIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 149 bits (361), Expect = 2e-36
Identities = 66/83 (79%), Positives = 76/83 (91%)
Frame = +1
Query: 412 AASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIR 591
A S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGME+ GIHE +YN IMKCDVDIR
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIR 64
Query: 592 KDLYANTVMSGGTTMYPGIADRM 660
KDLY+N V+SGG+TM+PGIADRM
Sbjct: 65 KDLYSNCVLSGGSTMFPGIADRM 87
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 110 bits (265), Expect = 8e-25
Identities = 57/132 (43%), Positives = 81/132 (61%), Gaps = 1/132 (0%)
Frame = +1
Query: 130 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE- 306
Q LSLYASG T G+ L SG + IYEG+ L H + L++ G LT+ L + L +
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQ 826
Query: 307 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERF 486
RG++FT+++ +IV DIKEK+CY++ D +E+ + L K Y LPDGQ+I+IG E
Sbjct: 827 RGHNFTSSSGWQIVNDIKEKICYLSKDHLKEVHNYKTNEGLTKFYTLPDGQMISIGYECI 886
Query: 487 RCPEALFQPSFL 522
E LF+P L
Sbjct: 887 SSMEPLFRPDLL 898
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 88.6 bits (210), Expect = 4e-18
Identities = 39/95 (41%), Positives = 64/95 (67%)
Frame = +1
Query: 22 HPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 201
HP+L++EA N + REK+T++MFE +N PA ++ +VL+ +A+GR+ G+V+DSG +
Sbjct: 34 HPLLMSEAAWNTRIKREKLTELMFEKYNVPAFFLCKNSVLTAFANGRSNGLVIDSGATQT 93
Query: 202 HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 306
VP+++GY L AI+R LAG +T ++ E
Sbjct: 94 SAVPVHDGYVLQQAIVRSPLAGDFITAQCRQMFEE 128
Score = 37.1 bits (82), Expect = 0.013
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +1
Query: 523 GMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRM 660
G + G+ + V S+ D+DIR L+ + +++GG T+ G +R+
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERL 191
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 70.9 bits (166), Expect = 8e-13
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Frame = +1
Query: 124 AIQAVLSLYASG-------RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 279
A +AVL+L AS RT TG V+DSGDGV+H +P+ EGY + I + +AGRD+T
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 99
Query: 280 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 405
++ ++L ER E + IKE+ Y+ D +E A
Sbjct: 100 FFVQQLLREREMGIPPEQSMETAKTIKERWGYICPDIAKEFA 141
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +1
Query: 463 ITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMY 639
+ + ERF PE F P F + + + E V N I C +D+R+ LY N V+SGG+TM+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMF 255
Query: 640 PGIADRM 660
R+
Sbjct: 256 RDFGRRL 262
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +1
Query: 1 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 177
L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 521 LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 579
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 37.5 bits (83), Expect = 0.010
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 9/137 (6%)
Frame = +1
Query: 70 EKMTQIMFETFNSPAMYVAIQAVLSLY------ASGRTTGIVLDSGDGVSHTVPIYEGYA 231
+ M +I+FE +N A+ A LS Y S +V+D+G +H VP++ G
Sbjct: 319 DAMDEILFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVPVFNGKV 378
Query: 232 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATA 411
+ A+ R + +L E +F ++ +KE CYV+ F ++M A
Sbjct: 379 IKKAVRR-----------QLHVLDE---TF-------VINQVKEDTCYVSSQFYKDMEIA 417
Query: 412 ---AASTSLEKSYELPD 453
++ + Y LPD
Sbjct: 418 RQRGKENTIVREYVLPD 434
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 36.7 bits (81), Expect = 0.017
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 529 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRM 660
E + + +S++ C +D RK L N V+ GGT M PG R+
Sbjct: 54 EEKSLATALLDSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRL 97
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 493 PEALFQPSFLGMESCGIHETV 555
PE +FQPS LG+E GI ET+
Sbjct: 3 PEIIFQPSMLGLEQAGITETM 23
>SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5)
Length = 257
Score = 32.3 bits (70), Expect = 0.36
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = -1
Query: 342 FPLSGGGERVTPLGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGV----GDTISGVEH 175
F +SG + D H++ + +TS V+ + G + D + T S E
Sbjct: 134 FGISGTANTEEQIDVDKHQITNKASTSSVEKANTAGTTGGTQDQHATQGNKASTCSFEEA 193
Query: 174 DTGGTTGGVQ 145
+T GTTGG Q
Sbjct: 194 NTAGTTGGTQ 203
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 32.3 bits (70), Expect = 0.36
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 166 TGIVLDSGDGVSHTVPI 216
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 61 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 177
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 306 LGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGVGDTISGVEHDTGG 163
L E + +V Q + GV S G+G G TISG D+GG
Sbjct: 1474 LQEAMMPIVSQQTCAAAMRRWGVVTSRMICGGFGAGSTISGCFGDSGG 1521
>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/73 (21%), Positives = 30/73 (41%)
Frame = -2
Query: 266 PAKSRRRMAWGRA*PS*MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELKVSNM 87
P+ + +W P T W +PSP+ T P ++T+W + +S++
Sbjct: 93 PSPQYKTTSWSLPLPQHKTTSWSSPSPKYKTTSWTSPSPQYKTTSWSSPLPQQTTFLSSL 152
Query: 86 IWVIFSLLALGLR 48
+I L + R
Sbjct: 153 YHIIGRLSGVHYR 165
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 29.1 bits (62), Expect = 3.4
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 2/138 (1%)
Frame = +3
Query: 249 PSGLGWSRLDRLPHEDPHREGLLVHHHR*EGNRS*HQGEALLCRPRLRAGDGHRCRLHLP 428
P + L+R P +D HR HHHR + + H+ + R + H+ + H
Sbjct: 820 PGSQSDNELNR-PPQDRHRR----HHHRRRHHNNKHRKHS-----REHSRRRHQRKHHKG 869
Query: 429 REVLRTXXXXXXXXXXXEVPLSRGSLPAFLPGYGIVRHP-RDRVQLHHEV-RRRHP*GPV 602
+ T E + ++ F+ G G++ H + Q+ E R + G
Sbjct: 870 NDAQETLEEIFEDDARDE----KENVDEFVNGGGMMEHELQSDSQISQETGARENDPGKK 925
Query: 603 RQHRHVRWYHHVPRYRRQ 656
+HRH R +HH ++ R+
Sbjct: 926 HKHRHRRHHHHRRQHNRK 943
>SB_55729| Best HMM Match : YajC (HMM E-Value=0.56)
Length = 654
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -1
Query: 249 EDGVGQSVTFVDGYGVGDTISGVEHDTGGTTGG 151
+DG G VDG GVGD G + D G GG
Sbjct: 9 DDGDGGGDDGVDGGGVGDDGDGDDSDCGDDGGG 41
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 64 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 213
NR + +++ E S ++ + +L+LY RT D+ + HT P
Sbjct: 437 NRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 49 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 177
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 358 KEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPE 498
+EK+ L+ E E A + LEK +L + +G+ER RC +
Sbjct: 2983 REKIVTSDLESELETERALQANELEKQNKLLEKLSADLGHERSRCED 3029
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,044,007
Number of Sequences: 59808
Number of extensions: 371227
Number of successful extensions: 1286
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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