Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0467
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             182   3e-48
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.6  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   4.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.0  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   7.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.9  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  182 bits (443), Expect = 3e-48
 Identities = 83/88 (94%), Positives = 87/88 (98%)
 Frame = +1

Query: 397 EMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKC 576
           EMATAA+S+SLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME+CGIHET YNSIMKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 577 DVDIRKDLYANTVMSGGTTMYPGIADRM 660
           DVDIRKDLYANTV+SGGTTMYPGIADRM
Sbjct: 61  DVDIRKDLYANTVLSGGTTMYPGIADRM 88


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 1    LRVAPEEHPVLLTEAPLNPKANREKM 78
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 363 LLDVTNDFPLSGGGERVTPLGEDLHEVVGQVATSQVQTEDGVGQS-VTFVDGYGVGDT 193
           ++D+T     S  G+ V     +L+ +VG  A   +  E+G G + VT  + +   DT
Sbjct: 18  MVDLTQCLQESSTGQSVEFSPMELNALVGTPAAPNMPAEEGEGMAGVTGEEPFDTLDT 75


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -2

Query: 590 RMSTSHFMMELYT--VSWMPHDSIPRKEGWKR 501
           R     F+  L T    W+ +++I RK  W R
Sbjct: 18  RSENDPFLKRLITGDEKWVVYNNIKRKRSWSR 49


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -2

Query: 590 RMSTSHFMMELYT--VSWMPHDSIPRKEGWKR 501
           R     F+  L T    W+ +++I RK  W R
Sbjct: 139 RNENDPFLKRLITGDEKWVVYNNIKRKRSWSR 170


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 558 QLHHEVRRRHP*GPVRQHRH 617
           Q+HH++  +HP    +Q +H
Sbjct: 167 QMHHQMHTQHPHMQPQQGQH 186


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -2

Query: 176 TIPVVRPEAYSESTAWMATYMAGELKVSNMIWVIFSL 66
           T+P  + E   +  AWM     G L+  N  +  F +
Sbjct: 33  TLPGYKIECVGDDIAWMKFDKEGRLRAINPEYGFFGV 69


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 558 QLHHEVRRRHP*GPVRQHR 614
           QL+ +V+  H   PV+QHR
Sbjct: 266 QLNSDVQPGHGSPPVKQHR 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,178
Number of Sequences: 438
Number of extensions: 3138
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)