Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0466
         (596 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    44   0.003
UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    37   0.31 
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    34   2.2  
UniRef50_P74238 Cluster: Slr1163 protein; n=1; Synechocystis sp....    33   3.9  
UniRef50_A1SY20 Cluster: Putative uncharacterized protein; n=1; ...    33   3.9  
UniRef50_A0FZ29 Cluster: Putative uncharacterized protein; n=1; ...    33   3.9  
UniRef50_Q236Z8 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_Q0CZR0 Cluster: Predicted protein; n=1; Aspergillus ter...    33   5.1  
UniRef50_Q6ZHH8 Cluster: Cell division-associated protein BIMB-l...    32   8.9  
UniRef50_A3ABS3 Cluster: Putative uncharacterized protein; n=3; ...    32   8.9  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 44.0 bits (99), Expect = 0.003
 Identities = 19/23 (82%), Positives = 19/23 (82%)
 Frame = -1

Query: 290 MGDGNHSPSGGPYARLPTRAIKK 222
           MGDGNHSPSG PYA LPTRA  K
Sbjct: 1   MGDGNHSPSGRPYASLPTRAKMK 23


>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 37.1 bits (82), Expect = 0.31
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -1

Query: 197 DRQTVGGSTWMRKCDNRNLWQDLGEAYAK 111
           D   V GSTWM+   +R+LW+ LGEA+ +
Sbjct: 463 DLVKVAGSTWMQAAQDRSLWKSLGEAFVQ 491


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = -3

Query: 333  GRQRLGSTXGIAEVYGRR 280
            GRQRLGS  GIAEV+GRR
Sbjct: 969  GRQRLGSAPGIAEVHGRR 986


>UniRef50_P74238 Cluster: Slr1163 protein; n=1; Synechocystis sp.
           PCC 6803|Rep: Slr1163 protein - Synechocystis sp.
           (strain PCC 6803)
          Length = 556

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +1

Query: 316 AKPLPTVPLFLTRLISRLETSFQRNSKQFFNIDKFINKIKSQFH 447
           A+ +P   +    L++ +E   Q NSK   NID F+NK +SQFH
Sbjct: 49  AESMPEEEVGKINLVTEIEFDDQNNSKNKENIDIFLNK-QSQFH 91


>UniRef50_A1SY20 Cluster: Putative uncharacterized protein; n=1;
           Psychromonas ingrahamii 37|Rep: Putative uncharacterized
           protein - Psychromonas ingrahamii (strain 37)
          Length = 332

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 248 RLPTRAIKKRILIHVRLDRQTVGGSTWMRKCDNRNLWQDLGEAYAKAKQSL-SMSNVYTN 72
           +LP   IK R   H RL    VG S W +  D  N W  + E  A  K +L  +S  Y N
Sbjct: 253 KLPDEKIKPRPAFHYRLSNSMVGDSAW-KVSDEWNRWVWV-EKLANDKNALKDLSKEYLN 310

Query: 71  RMYLN 57
             YLN
Sbjct: 311 --YLN 313


>UniRef50_A0FZ29 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia phymatum STM815|Rep: Putative
           uncharacterized protein - Burkholderia phymatum STM815
          Length = 473

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -3

Query: 123 GLCESKTIFVDVKCLH*QNVPKYE-LRLLIKASLFLSLS-VPR 1
           G+C+SK IFV+V   H  + PK E L+ L   +L + LS VPR
Sbjct: 126 GVCQSKAIFVEVTVTHEPDAPKLEALKRLQTPTLEIDLSAVPR 168


>UniRef50_Q236Z8 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1302

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -1

Query: 209 HVRLDRQTVGGSTWMRKCDNRNLWQDLGEAYAKAKQSLSMSN-VYTNRMYLN 57
           +++L +QT   + W+ +  NR  W+ L   Y K KQ +S+++ +  NR  LN
Sbjct: 86  YLKLHKQT---NQWLVERQNRKTWEVLNNYYEKRKQDMSITDRILFNRRVLN 134


>UniRef50_Q0CZR0 Cluster: Predicted protein; n=1; Aspergillus
           terreus NIH2624|Rep: Predicted protein - Aspergillus
           terreus (strain NIH 2624)
          Length = 1012

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -1

Query: 179 GSTWMRKCDNRNLWQDLGEAYAKAKQSLSMSNVYTNRMYLN 57
           G T  R C + N+W D GE   KAK + S S + T + YLN
Sbjct: 605 GKTEQRYCSH-NIWMDAGEDNTKAKHTTS-SELTTAKSYLN 643


>UniRef50_Q6ZHH8 Cluster: Cell division-associated protein
           BIMB-like; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Cell division-associated protein
           BIMB-like - Oryza sativa subsp. japonica (Rice)
          Length = 975

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 479 QSITYLSLVLQ-WNCDFILLMNLSILKNCLLFRWKLV 372
           QSI Y   +   WNC F+  +N   ++N L FRW  V
Sbjct: 160 QSIDYTCSIFGCWNCLFVNTLNSGSIQNILQFRWDCV 196


>UniRef50_A3ABS3 Cluster: Putative uncharacterized protein; n=3; Oryza
            sativa|Rep: Putative uncharacterized protein - Oryza
            sativa subsp. japonica (Rice)
          Length = 2163

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 479  QSITYLSLVLQ-WNCDFILLMNLSILKNCLLFRWKLV 372
            QSI Y   +   WNC F+  +N   ++N L FRW  V
Sbjct: 1342 QSIDYTCSIFGCWNCLFVNTLNSGSIQNILQFRWDCV 1378


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,871,905
Number of Sequences: 1657284
Number of extensions: 12969722
Number of successful extensions: 33241
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 32175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33235
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)