Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0466
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 32 0.30
07_01_0843 - 6851354-6851518,6851654-6852448 31 0.53
05_01_0575 + 5112988-5114082 30 1.2
02_01_0517 + 3733921-3735012 30 1.2
01_01_1181 + 9410310-9411329 29 2.1
08_02_1053 - 23968372-23968442,23969245-23969294,23970396-239704... 29 3.7
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 28 4.9
10_08_0245 + 16138402-16138548,16138648-16138701,16139106-161391... 28 6.5
01_07_0103 + 41098987-41099295 28 6.5
01_01_0132 - 1197988-1198206,1198255-1198356,1198518-1198821,119... 28 6.5
>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 479 QSITYLSLVLQ-WNCDFILLMNLSILKNCLLFRWKLV 372
QSI Y + WNC F+ +N ++N L FRW V
Sbjct: 1367 QSIDYTCSIFGCWNCLFVNTLNSGSIQNILQFRWDCV 1403
>07_01_0843 - 6851354-6851518,6851654-6852448
Length = 319
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = -1
Query: 302 LLKSMGDGNHSPSGGPYARLPTRAIKKRILIHVRLDRQTVGGSTWMRKCDNRNLWQDLGE 123
LL + D + S G LPT A K + L ++R T + +M + D + LW L +
Sbjct: 35 LLNCIQDPTIATSAGGVNNLPTSAEKNQALHYLRHHLNTTLKNEYMTEEDPKVLWDSLKD 94
Query: 122 AYAKAKQSL 96
Y ++L
Sbjct: 95 RYGHQVKAL 103
>05_01_0575 + 5112988-5114082
Length = 364
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = -1
Query: 302 LLKSMGDGNHSPSGGPYARLPTRAIKKRILIHVRLDRQTVGGSTWMRKCDNRNLWQDLGE 123
LL + D + S G LPT A K + L +R T + +M + D + LW L +
Sbjct: 35 LLNCIQDPTIATSAGGVNNLPTSAEKNQALHFLRHHLNTTLKNEYMTEEDPKVLWDSLKD 94
Query: 122 AYAKAKQSL 96
Y ++L
Sbjct: 95 RYGHQVKAL 103
>02_01_0517 + 3733921-3735012
Length = 363
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = -1
Query: 302 LLKSMGDGNHSPSGGPYARLPTRAIKKRILIHVRLDRQTVGGSTWMRKCDNRNLWQDLGE 123
LL + D + S G LPT A K + L +R T + +M + D + LW L +
Sbjct: 35 LLNCIQDPTIATSAGGVNNLPTSAEKNQALHFLRHHLNTTLKNEYMTEEDPKVLWDSLKD 94
Query: 122 AYAKAKQSL 96
Y ++L
Sbjct: 95 RYGHQVKAL 103
>01_01_1181 + 9410310-9411329
Length = 339
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = -1
Query: 302 LLKSMGDGNHSPSGGPYARLPTRAIKKRILIHVRLDRQTVGGSTWMRKCDNRNLWQDLGE 123
LL + D + S G LPT A K + L +R T + +M + D LW L +
Sbjct: 7 LLNCIQDPTIATSAGGVNNLPTSAEKNQALHFLRHHLNTTLKNEYMTEEDPNVLWDSLKD 66
Query: 122 AYAKAKQSL 96
Y ++L
Sbjct: 67 RYGHQVKAL 75
>08_02_1053 -
23968372-23968442,23969245-23969294,23970396-23970457,
23970527-23970709,23970737-23970901,23972235-23972408
Length = 234
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 259 PPDGEWL--PSPIDFSNAXGRAKPLPTVPLFLTRLISRLETSFQRNSKQFFNI 411
P G W P P F++ +A P ++ +L +E++F++N+K + ++
Sbjct: 32 PYGGPWFATPPPAWFASPPSQAMPSSSISAWLNNSNDHIESNFKKNNKYWGDV 84
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +3
Query: 126 PQILP*VPIVTFPHPRRTPYGLSVQPDVD*YSFFYCPCRQTSIRP 260
P P VP P P P G ++ P + YSF Y +S P
Sbjct: 299 PAPAPPVPTPLAPTPADVPPGFTMSPTITRYSFGYDGASSSSAMP 343
>10_08_0245 +
16138402-16138548,16138648-16138701,16139106-16139171,
16139427-16139483,16140490-16140610,16140704-16140744,
16140835-16140886,16141555-16141623,16141697-16141768,
16141890-16142045,16143067-16143284,16143359-16143398,
16143484-16143602,16143726-16143827,16144256-16144300,
16144890-16145030,16145172-16145267,16145415-16145516,
16145611-16145709
Length = 598
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = -3
Query: 585 VTLVSHAM*HKKDSVNARGQRPAIAIRYRMRLPGTS-INHVFIPSTTMELRFYFINEFID 409
V + H K +V ++ A+ +++PGT+ + VF T + + F+D
Sbjct: 423 VKRMDHVARRKGCAVQVAAEKGLFALAVNLQVPGTTNYSMVFYFVTKKLIPNSLLQRFVD 482
Query: 408 IKELLTIPLETRFESTNKTSKKQWYGRQRLGST 310
+ +RF+ K W RQ +GST
Sbjct: 483 GDDEFR---NSRFKLIPSVPKGSWIVRQSVGST 512
>01_07_0103 + 41098987-41099295
Length = 102
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 395 LLFRWKLVSSRLIRRVRNNGTVGSGLALPXALLKSM-GD 282
+L RW+L R RR R G VGS L LL S+ GD
Sbjct: 29 VLPRWRLRRQRRARRWRWGGCVGSASGLRRQLLASVAGD 67
>01_01_0132 -
1197988-1198206,1198255-1198356,1198518-1198821,
1199221-1199292,1199384-1199420,1199527-1199585,
1199844-1200128,1200293-1200465,1201020-1201213,
1202245-1202374
Length = 524
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -1
Query: 302 LLKSMGDGNHSPSGGPYARLPTRAIKKRILIHVRLDRQTVGGSTWMRKCDNRNLW 138
LLK M D P+ GP A+ P ++R LD + G W N++ W
Sbjct: 55 LLKGMPDSAAGPAEGPIAKYPLVLAEERTRRPDVLDHLRMYGGGW--NITNKHYW 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,197,977
Number of Sequences: 37544
Number of extensions: 378753
Number of successful extensions: 928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -