Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0466
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52926| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_8173| Best HMM Match : GreA_GreB_N (HMM E-Value=0.27)               30   1.6  
SB_6285| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           28   6.6  

>SB_52926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -1

Query: 227 KKRILIHVRLDRQTVGGSTWMRKCDNRNLWQDLGEAYAKAKQSLSMSNVYTNRMYLN-TS 51
           K +++ H   +RQ VG  +W++       W+   +AY K  +SL++   YT   YL+ TS
Sbjct: 7   KIKLVKHSWFERQYVG--SWIQGKLLAMKWESYVDAYCKQGKSLALGKSYTEDDYLDWTS 64

Query: 50  *DC 42
             C
Sbjct: 65  NSC 67


>SB_8173| Best HMM Match : GreA_GreB_N (HMM E-Value=0.27)
          Length = 488

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 29  EAFINNLNSYLGTFC*CKHLTSTKIVLLSHRPP--PNPAISSDCHISSST*NPLRSVCP 199
           E+FI N   +L TF   KH  S   +   H+ P  P P  +S+  +S     PL S  P
Sbjct: 319 ESFIRNGQIFLVTFVSHKHTPSESDLPPLHKDPVMPGPRWNSEPQLSRGGDEPLESFAP 377


>SB_6285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -1

Query: 227 KKRILIHVRLDRQTVGGSTWMRKCDNRNLWQDLGEAYAKAKQSLSMSNVYTNRMYLN 57
           K +++ H   +RQ VG  +W++       W+   +AY K  +SL++   YT   YL+
Sbjct: 52  KIKLVKHSWFERQYVG--SWIQGKLLAMKWESYVDAYCKQGKSLALGKSYTEDDYLD 106


>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 179 GSTWMRKCDNRNLWQDLGEAYAKAK 105
           G  WM  C     W++L E++ K+K
Sbjct: 152 GPQWMLVCSTATEWEELAESFKKSK 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,485,664
Number of Sequences: 59808
Number of extensions: 412363
Number of successful extensions: 1531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)