Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0466
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical...    28   4.4  
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical...    28   4.4  
AC006673-7|AAF39925.2|  332|Caenorhabditis elegans Serpentine re...    28   4.4  

>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
           protein Y105C5B.21b protein.
          Length = 1084

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 169 HVEPPTVC-LSNLTWINILFFIALVGRRAYGPPDGEWLPSPIDFS 300
           H+   T C ++NLT   + F ++  GR  +GP     LP  I  S
Sbjct: 88  HLLKDTTCRVTNLTSHEVQFRVSAYGRTGFGPASNPSLPVKIPIS 132


>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
           protein Y105C5B.21a protein.
          Length = 1254

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 169 HVEPPTVC-LSNLTWINILFFIALVGRRAYGPPDGEWLPSPIDFS 300
           H+   T C ++NLT   + F ++  GR  +GP     LP  I  S
Sbjct: 258 HLLKDTTCRVTNLTSHEVQFRVSAYGRTGFGPASNPSLPVKIPIS 302


>AC006673-7|AAF39925.2|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein4 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 103 CFAFA*ASPKSCHKFRLSHFLIHVEPPTVCLSNLTWINILFFIALV 240
           CFA+  AS  S   FR+   ++H    T     + +I   F++++V
Sbjct: 100 CFAYTGASAISLFVFRMEAVIVHRTEQTFLRKVVKYIQYAFYVSIV 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,819,749
Number of Sequences: 27780
Number of extensions: 307999
Number of successful extensions: 776
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)