Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0466
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21940.2 68415.m02607 shikimate kinase, putative similar to s...    31   0.44 
At2g21940.1 68415.m02606 shikimate kinase, putative similar to s...    31   0.44 
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    29   1.8  
At1g63490.1 68414.m07179 transcription factor jumonji (jmjC) dom...    29   2.4  
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ...    28   5.4  
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ...    27   7.2  
At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR...    27   9.5  
At1g69100.1 68414.m07907 aspartyl protease family protein contai...    27   9.5  

>At2g21940.2 68415.m02607 shikimate kinase, putative similar to
           shikimate kinase precursor from Lycopersicon esculentum
           [SP|Q00497]; contains Pfam shikimate kinase domain
           PF01202
          Length = 304

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 143 LWQDLGEAYAKAKQSLSMSNVYTNRMYLNTS 51
           +W + GEAY  A   +S+ N+   R Y N S
Sbjct: 242 IWDERGEAYTNANARVSLENIAAKRGYKNVS 272


>At2g21940.1 68415.m02606 shikimate kinase, putative similar to
           shikimate kinase precursor from Lycopersicon esculentum
           [SP|Q00497]; contains Pfam shikimate kinase domain
           PF01202
          Length = 303

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 143 LWQDLGEAYAKAKQSLSMSNVYTNRMYLNTS 51
           +W + GEAY  A   +S+ N+   R Y N S
Sbjct: 241 IWDERGEAYTNANARVSLENIAAKRGYKNVS 271


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 187 VCLSNLTW-INILFFIALV-GRRAYGPPDGEWLP-SPIDFSNAXGRA 318
           +  + L W +N+     ++ G + Y P  GEW+  SP+D     GRA
Sbjct: 835 ISTATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGRA 881


>At1g63490.1 68414.m07179 transcription factor jumonji (jmjC)
            domain-containing protein similar to PLU-1 protein
            (GI:4902724) [Homo sapiens] and PLU1 (GI:22726257) [Mus
            musculus]; similar to Retinoblastoma-binding protein 2
            (RBBP-2) (SP:P29375) {Homo sapiens}; contains Pfam
            PF02373: jmjC domain
          Length = 1116

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -1

Query: 542  LTREVNARRSRFAIECGFPEHQSITYLSLVLQWNCDFILLMNLS 411
            +TR  +ARRS  A+   F E   +   SL L W C  I L + S
Sbjct: 869  ITRVDSARRSGLALGLNFDELPKLRTASLKLGWCCKTITLSSSS 912


>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3
           Pfam PF00400: WD domain, G-beta repeats;
          Length = 1327

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 117 CESKTIFVDVKCLH*QNVPKYEL 49
           CE+K IF+D+  +  ++VPK EL
Sbjct: 60  CENKAIFLDLVTMRGRDVPKQEL 82


>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 766

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 117 CESKTIFVDVKCLH*QNVPKYELRLLIKASLFLSLS 10
           C SK + +DV+C+   +VP+Y      K  LF+S S
Sbjct: 571 CVSKQVQIDVRCI--SSVPEYFTHKSHKHPLFISTS 604


>At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1261

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -3

Query: 528 QRPAIAIRYRMRLPGTSINHVFIPSTTMELRFYFINEFIDIKELLTIPLETRFE 367
           Q+P    +  +   G  + H FI      L    IN FID +E +   LE  F+
Sbjct: 13  QQPPPQHKVFINFRGAELRHKFISHLLKALERERINVFIDTRETMGTGLENLFQ 66


>At1g69100.1 68414.m07907 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 343

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 356 RRVRNNGTVGSGLALPXALLKSMGDGNHSPSGG 258
           R V+ +G +G G+    A     GDG   P+GG
Sbjct: 146 RSVKFDGVIGLGIKSSRAQGSVTGDGGEDPNGG 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,886,001
Number of Sequences: 28952
Number of extensions: 290083
Number of successful extensions: 719
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)