Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0464
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 128 5e-31
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 31 0.19
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.0
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.0
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.1
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 5.5
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 7.2
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 7.2
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 9.5
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 9.5
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 9.5
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 25 9.5
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 128 bits (310), Expect = 5e-31
Identities = 72/197 (36%), Positives = 113/197 (57%), Gaps = 1/197 (0%)
Frame = +3
Query: 66 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 245
+H + ATLK I RLKS+KNI+KIT+++K V+ K TRA+R ++A+ Y + + +
Sbjct: 24 FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83
Query: 246 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSR 422
+ A PE+ K L VA +SD+GLCG +H+ +S++IR L +P EN + +G+K R
Sbjct: 84 KEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVR 142
Query: 423 GILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQ 602
L R + IG P+F +A Q+++ IL ++ ++YNKF S VS+
Sbjct: 143 TQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFET 202
Query: 603 SDLPLYTKKSIESASKL 653
LYT K+I + L
Sbjct: 203 VMKNLYTTKAINESPNL 219
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 30.7 bits (66), Expect = 0.19
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 264 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 428
PPED P++L +T+ G+ GA+ TGV +N L E GA ++ +IC +
Sbjct: 70 PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128
Query: 429 LQRLYGKHIISVA 467
L +Y ++VA
Sbjct: 129 LMTVYSLGELAVA 141
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 383 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 249
ST+F+ A + GY +Y+ Q++V N Q+ V FG N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.0
Identities = 25/89 (28%), Positives = 42/89 (47%)
Frame = +1
Query: 355 SATVSANLVLRTSR*SVWEINLAASCRDCTESTSLVLLMRSDVSHLLSWTQVSWPLLSSP 534
S+ S++ + +S S + +S + +TS L S S L+ + ++ L+S
Sbjct: 83 SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASS 142
Query: 535 RDTSLVPERSFTTSSSLWSRTPSPTCPST 621
TS S TTSSSL S + + T +T
Sbjct: 143 SITSSSLASSSTTSSSLASSSTNSTTSAT 171
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 383 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 249
ST+F+ A + GY +Y+ Q++V N Q+ V FG N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 439 CTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSF 567
C ++L L +S++ LS + +PL + RDT L+ +F
Sbjct: 172 CETDSALAQLFKSEIYQQLSDFRRDFPLSHALRDTMLIARLNF 214
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 297 AMTSDRGLCGAVHTGVSKVIRNRLSE 374
A+ SD +C V TG+S ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -3
Query: 515 QLTCVQESRWETSDLISNTNDVLSVQSLQDAARFISHTDHLDVLSTRFAETVADHFGY 342
+L + ES+++T+ +T + + D R+I D D + +ET+A F Y
Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 120 KSVKNIQKITQSMKMVSAAKYTRAERDLK 206
+ VKN+Q S+K +SAA +TR +K
Sbjct: 958 QQVKNMQLELASLKQISAAFFTRIPLKIK 986
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 81 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDL 203
+N KAI I K VKNI T ++++ RA + L
Sbjct: 1071 KNKQPRKAILIEFKGVKNINAETVTLRVKDLTHLHRAYKGL 1111
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -3
Query: 641 ALNRLLSVEGQVGLGVRDHRLELV--VNDL-SGTKLVSRGEDSSGQL 510
A+ S E Q LG++ RL L+ ++ L +GT+ +SRG D G +
Sbjct: 219 AIRGFASTE-QFKLGIQTIRLSLISRLSSLRAGTRFLSRGVDDDGNV 264
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 270 EDDPKQLFVAMTSDRGLCGAVHT--GVS 347
+ +P L VA+ SDR CG+++ GVS
Sbjct: 876 KQNPYDLLVALDSDRKACGSLYVDDGVS 903
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +3
Query: 6 ICKMLGRFGPGVGTQVVAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKY 182
+ LG F VG A V P N+A + +R K+V ++ K+ + +Y
Sbjct: 69 LADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQY 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,509
Number of Sequences: 5004
Number of extensions: 63413
Number of successful extensions: 207
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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