Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0464
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 66 3e-11
07_03_0571 - 19602755-19603831 62 3e-10
07_03_1697 - 28795521-28797328,28797430-28797550 33 0.26
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850... 31 0.61
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 29 2.4
07_01_1111 + 10279778-10280065,10280265-10280340,10280734-102819... 29 2.4
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015... 29 2.4
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805... 29 3.2
11_06_0552 - 24913060-24913401,24913535-24913618,24913834-249138... 27 9.9
08_02_0730 - 20472851-20473075,20473332-20474285 27 9.9
05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274... 27 9.9
03_05_0287 + 22759946-22760836 27 9.9
01_06_1240 - 35654671-35654805,35654887-35655040,35655254-356553... 27 9.9
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 65.7 bits (153), Expect = 3e-11
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Frame = +3
Query: 99 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDD 278
+A+ R+KSV+NIQKIT++MKMV+A+K + + +R + F P D
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116
Query: 279 PKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGK 449
K + VA+TSD+GLCG +++ VSK + S P E+ K + +G+K + L R
Sbjct: 117 KKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLIRDSKD 175
Query: 450 HIISVANEIGRLP 488
+I +E+ + P
Sbjct: 176 NIEMTVSELQKNP 188
>07_03_0571 - 19602755-19603831
Length = 358
Score = 62.5 bits (145), Expect = 3e-10
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 20/201 (9%)
Frame = +3
Query: 93 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPP 269
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+ Y +
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96
Query: 270 ED----------DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGD 413
ED K V +T +RGLCG+ + V K R+ E ++ V+ VG
Sbjct: 97 EDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGK 156
Query: 414 KSRGILQRLYGKHIISVAN--EIGRLPPTFLDASQLATAILTSGYEFGSGKI--IYNKFK 581
K R + I E+ + PT D+ + + + K+ +Y+KF
Sbjct: 157 KGNAYFIR---RPFIPTERTLEVNGI-PTVKDSQSICDLVYSLFVSEAVDKVELLYSKFV 212
Query: 582 SVV---SYAQSDLPLYTKKSI 635
S+V Q+ LP+ K I
Sbjct: 213 SLVRSDPIIQTLLPMSPKGEI 233
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 32.7 bits (71), Expect = 0.26
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 1/119 (0%)
Frame = -3
Query: 644 GALNRLLSVEGQVGLGVRDHRLELVVNDLSGTK-LVSRGEDSSGQLTCVQESRWETSDLI 468
G ++S +G G+ H L +D++ T + SSGQ SR ET DL+
Sbjct: 46 GNSQEVISAPSSLGSGLPPHSKHLGSSDVASTSGSTPEAQISSGQQGADMTSRRETDDLV 105
Query: 467 SNTNDVLSVQSLQDAARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSNK 291
S N+ + + A + H + +E + G + + AQ S R K
Sbjct: 106 SARNNAPEPERVVPAEKEEEHVQSTSQQAVGNSEDLTR--GDAATAADAQCSDRASEGK 162
>11_02_0119 -
8502455-8503015,8503311-8504009,8504512-8504571,
8504744-8504800
Length = 458
Score = 31.5 bits (68), Expect = 0.61
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = -3
Query: 485 ETSDLISNTNDVLSVQSLQDAARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVR 306
E ++ SN ++ L ++ D S + LDVL + VAD + + +A+ +
Sbjct: 105 EVAECESNAHNDLEQITMDDIGELYSLCEELDVLDDDSSSWVADPWSSFQLVPTAEATDV 164
Query: 305 GHSNKQLLGVIFGRCNLSP 249
+ LG I G C SP
Sbjct: 165 DDAVVAALGAIDGSCRPSP 183
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +1
Query: 568 TTSSSLWSRTPSPTCPSTLRSLLRAPAS 651
++SSSL RTPSPT P L LLR P+S
Sbjct: 12 SSSSSLSPRTPSPTHP--LPHLLRLPSS 37
>07_01_1111 +
10279778-10280065,10280265-10280340,10280734-10281944,
10283779-10284138
Length = 644
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +1
Query: 526 SSPRDTSLVP--ERSFTTSSSLW---SRTPSPTCPSTLRSLLRAPAS 651
SS TS VP ER + S+ LW + TP PT P T L A A+
Sbjct: 29 SSSSSTSQVPAKERQTSGSNHLWFVPNATPPPTAPPTAHDLHAAAAA 75
>05_07_0367 -
29700855-29700920,29701092-29701149,29701446-29701503,
29701800-29701857,29702154-29702211,29702508-29702551,
29702840-29703022,29703192-29703249,29703545-29703602,
29703897-29703954,29704250-29704307,29704956-29705013,
29705310-29705367,29705664-29705721,29706348-29706398,
29706695-29706752,29707049-29707106,29707403-29707459,
29707754-29707810,29708085-29708135,29708431-29708507,
29708785-29708842,29709139-29709195,29709490-29709546,
29709821-29709893,29710167-29710224,29710521-29710578,
29710875-29710931,29711558-29711608,29711904-29711980,
29712258-29712315,29712612-29712669,29712966-29713016,
29713667-29713717,29714014-29714057,29714368-29714444,
29714722-29714779,29715076-29715126,29715423-29715480,
29715776-29715833,29716130-29716187,29716484-29716534,
29716831-29716907,29717185-29717242,29717539-29717589,
29718240-29718316,29718594-29718651,29718947-29719004,
29719301-29719351,29719648-29719705,29723277-29723334,
29723631-29723681,29724331-29724388,29724684-29724741,
29725038-29725088,29725385-29725442,29725738-29725814,
29726092-29726148,29726444-29726501,29726798-29726848,
29727070-29727075
Length = 1209
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 433 RDCTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPR-DTSLVPERSFTTSSSLWSRTPSPT 609
R E+T+ M SD+ T SWP+L + R T R F T ++ W + P+
Sbjct: 420 RRFAETTAASWPMPSDIRRFAETTAASWPMLWTLRYSTFRRNNRCFVTYATSWKTSCGPS 479
>03_06_0737 +
35879723-35879990,35880105-35880201,35880464-35880591,
35880686-35880767,35880855-35880918,35880930-35881022,
35881120-35881178,35881391-35881826,35882050-35882120,
35882201-35882351
Length = 482
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -1
Query: 376 GSLRRLRITLDTPVCTAPHKPLSEVIAT---NNCLGSSSGGVTSA 251
GSL+R R++ PH S I + C+GSS G TSA
Sbjct: 337 GSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSA 381
>11_06_0552 -
24913060-24913401,24913535-24913618,24913834-24913896,
24913983-24914121,24914225-24914332,24914463-24914563,
24914674-24914740,24914841-24914887,24914963-24915204,
24915297-24915356,24915435-24915532,24916036-24916154,
24916273-24916440
Length = 545
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 442 TESTSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSFTTSSSLWSRTPSP 606
T+ S +++ S ++ +L T V + LL+ P L+P R SS S PSP
Sbjct: 411 TQLPSNAIMITSTITVVLFSTMV-FGLLTKPLIRLLIPARHLNRESSALSDPPSP 464
>08_02_0730 - 20472851-20473075,20473332-20474285
Length = 392
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 464 NTNDVLSVQSLQDAARFISHTDHLDVLSTRFAETVADHFGYT 339
++ DV+ + SL+D A FI H L + + + + +H +T
Sbjct: 346 DSQDVVPIDSLEDEALFIGHNGTLCLSTKDYPALLPNHVYFT 387
>05_06_0223 -
26525618-26526112,26526203-26526370,26526649-26527473,
26527898-26528004,26529701-26529767
Length = 553
Score = 27.5 bits (58), Expect = 9.9
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Frame = -3
Query: 401 DHLDVLSTRFAETVADHF---------GYTSVYSSAQTSVR---GHSNKQLLGV-IFGRC 261
D+L ++S A V D F + SV T++R GH +++L V I G C
Sbjct: 369 DYLSLVSVLHASPVLDTFILSVQQGGMKHDSVSGDTTTNLRTMPGHKHERLKEVMIIGFC 428
Query: 260 NLSPFIELYCTFTIGTSSFQVTLSTGVFSS*HHLHGL 150
+ + +EL C T+S + T++ H L +
Sbjct: 429 SATSMVELTCHILENTTSLE-TITLDAVCDVHDLENI 464
>03_05_0287 + 22759946-22760836
Length = 296
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 186 RAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGL 320
R+ DLK P+ G + ERA + ++DP +FV D G+
Sbjct: 223 RSVIDLKPVLPWPIGKPKGKERACLAVVDEDPDVIFVGTEEDDGV 267
>01_06_1240 -
35654671-35654805,35654887-35655040,35655254-35655335,
35655413-35655533,35655622-35655750,35656116-35656136,
35656655-35656972
Length = 319
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 484 SHLLSWTQVSWPLLSSPRDTSLVPERSFTTSSSLWSRTPSPTCPS 618
+ LLS+ +PLLS P D+ P +F L S P+ T P+
Sbjct: 53 AQLLSFVGFRYPLLSGPADSEQSPSVAF---MPLRSEIPADTAPA 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,482,738
Number of Sequences: 37544
Number of extensions: 466497
Number of successful extensions: 1486
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -