Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0464
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)             183   1e-46
SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4)              33   0.27 
SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            29   4.4  
SB_29237| Best HMM Match : I-set (HMM E-Value=0)                       29   4.4  
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)                   28   5.8  
SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)                        28   7.6  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score =  183 bits (446), Expect = 1e-46
 Identities = 80/181 (44%), Positives = 130/181 (71%)
 Frame = +3

Query: 105 ISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPK 284
           +S+RL+SVKNIQKIT+SMKMVSAAK+ RAE++LK+AR YG+GA   Y++ E+    +DPK
Sbjct: 62  VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121

Query: 285 QLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISV 464
            L V ++SDRGLCG +H+G++K ++  ++   + N+ ++  GDK++ IL R  GK+++  
Sbjct: 122 HLIVVLSSDRGLCGGIHSGLAKAVKASIAGNPSRNVGIVSFGDKTKQILSRTLGKNMLMS 181

Query: 465 ANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESA 644
             ++G+ PP F +A+ LA  IL +G++F +G + YN F+SVVS+  S   +Y+  ++ +A
Sbjct: 182 FMDVGKKPPLFCEATFLAQEILDAGFDFNTGDMFYNVFRSVVSFRASTKSIYSFDNLNNA 241

Query: 645 S 647
           +
Sbjct: 242 A 242


>SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4)
          Length = 571

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
 Frame = +3

Query: 279 PKQLFVAMTSDRG-LCGAVHTGVSKV------IRNRLSEPGAENIKVICVGDKSRGILQR 437
           P++LF+   S  G +  AV+TG+S+V      +R    +     IK   + D+ +G  + 
Sbjct: 447 PRRLFIIDHSLEGWITNAVYTGISRVRLAGQIVRVIPPDDTPARIKRYAIDDRQKGRTKY 506

Query: 438 LYGKHIISVANEIGRLPPTFLDASQLATAILTSGY 542
               H+++V N +G +       +   T +L  GY
Sbjct: 507 TGPHHVLTVDNVLGMIADAEKKYTLCGTQLLLQGY 541


>SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = +3

Query: 279  PKQLFVAMTSDRG-LCGAVHTGVSKVIRNRLSEPGAEN-----IKVICVGDKSRGILQRL 440
            P++LF+   +  G +  AV+TG+ +V   RL    +E      IK   + D+ +G  +  
Sbjct: 842  PRRLFIIDHNLEGWIANAVYTGIFRV---RLQATPSEELIIARIKRYAIDDRQKGRTKYT 898

Query: 441  YGKHIISVANEIGRLPPTFLDASQLATAILTSGY 542
               H+++V + +G +  T    +     +L  GY
Sbjct: 899  GSHHVLTVDHVLGMIAETEKKCTVCGAQLLLQGY 932


>SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
 Frame = +3

Query: 279  PKQLFVAMTSDRG-LCGAVHTGVSKVIRN----RLSEPGAEN-----IKVICVGDKSRGI 428
            P++LF+   S  G +  AV+TG+S+V       R++ P   +     IK   + D+ +G 
Sbjct: 754  PRRLFIIDHSLEGWITNAVYTGISRVRHTDQIVRVTPPPPPDNTPARIKRYAIDDRQKGR 813

Query: 429  LQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGY 542
             +     H+++V + +G +       +   T  L  GY
Sbjct: 814  TKYTGSHHLLTVYHVLGMIADAEKKCTVCGTQRLLQGY 851


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 167 HHLHGLCDFLDIFHRFKTDGNGLQSSHIPVWL 72
           +H+   C+  + F+R +  G G    H+ VWL
Sbjct: 595 NHIRNRCNVENFFYRIEFQGRGTAHVHLLVWL 626


>SB_29237| Best HMM Match : I-set (HMM E-Value=0)
          Length = 869

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 575 LVVNDLSGTKLVSRGEDSSGQLTCVQESRWETSDLI-SNTNDVLSVQSLQDAARFIS 408
           ++VN      +++  ++ +G+  CV ++R    + + S+    L VQS+ +AA+  S
Sbjct: 83  VIVNQDGSLSIIATQKEDAGEYICVAKARMNKRNYVESSRAAALEVQSICEAAKIAS 139


>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
          Length = 370

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -3

Query: 473 LISNTNDVLSVQSLQDAARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSN 294
           LI N  DV      +D+   + HTD+  V  +R  E V DH   T+   + + S +  S+
Sbjct: 62  LIRNNADVDEGME-EDSQMPLDHTDNTPVTHSREFEAVDDHTPPTTPTETTRKSAKRQSD 120

Query: 293 KQ 288
            Q
Sbjct: 121 SQ 122


>SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -3

Query: 590 DHRLELVVNDLSGTKLVSRGEDSSGQLTCVQESRWETSDLISNTNDVLSVQSLQDAA-RF 414
           +HRL  +  DL    LV   + +   +TC+ +++  +  +   + DV +   L+DA    
Sbjct: 11  NHRLRCLHVDLFPVVLVDLQKKAGNDVTCLLQNKHGSGSVSFISCDVSNQDQLKDAFWET 70

Query: 413 ISHTDHLDVL 384
           +S   HLD++
Sbjct: 71  VSTHGHLDIV 80


>SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 249 RAEVTPPEDDPKQLFVAMTSDRGLCG 326
           RA  TPPE   K   + + S  GLCG
Sbjct: 263 RARATPPEVTDKMAILRLPSGLGLCG 288


>SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)
          Length = 215

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 14 NVGTLRTGCRHPSRGGGLP 70
          N+ TL TG R P  GGG+P
Sbjct: 26 NLNTLPTGARQPVPGGGVP 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,977,671
Number of Sequences: 59808
Number of extensions: 524898
Number of successful extensions: 1652
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)