Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0464
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   1.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.6  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   3.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.5  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
          protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 26 LRTGCRHPSRGGGLPSAKQ 82
          L + C  PSRG  +PS+++
Sbjct: 12 LLSSCTRPSRGNAVPSSQR 30


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
          protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 26 LRTGCRHPSRGGGLPSAKQ 82
          L + C  PSRG  +PS+++
Sbjct: 12 LLSSCTRPSRGNAVPSSQR 30


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -3

Query: 638 LNRLLSVEGQVGLGVRDHRLELVVNDLSGTKLVSRGEDSSGQLTCVQES 492
           L R + V     + + DHR  +    L  + +V   +D S  L CV ++
Sbjct: 215 LTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSLVCVAQA 263


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -3

Query: 638 LNRLLSVEGQVGLGVRDHRLELVVNDLSGTKLVSRGEDSSGQLTCVQES 492
           L R + V     + + DHR  +    L  + +V   +D S  L CV ++
Sbjct: 215 LTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSLVCVAQA 263


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 454 MCFPYNLCRMPRDLSPTQITL 392
           M  PY++ ++P  LSP   T+
Sbjct: 1   MSSPYHVAQLPHHLSPNMPTM 21


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 529 SPRDTSLVPERSFTTSSSLWSRTPSPTCPSTLRSLLRAPA 648
           SP  TS +  R +  + +L    PSP  PST   +L+ P+
Sbjct: 417 SPDRTSPMEYRLY--NPALIQSQPSPQYPSTSSHILQQPS 454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,104
Number of Sequences: 438
Number of extensions: 4520
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)