Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0463
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0407 + 3090880-3092010                                           30   1.5  
01_02_0103 + 11153389-11153856                                         29   2.6  
12_02_0708 + 22338847-22339137,22339245-22339373                       29   3.4  
12_01_0415 + 3292576-3293727                                           29   4.5  
12_01_0377 - 2939384-2939505,2939629-2939695,2940324-2940543,294...    28   6.0  
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886...    28   6.0  

>11_01_0407 + 3090880-3092010
          Length = 376

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 494 SEQWSRGREFLTVGSGLALPRA 429
           S  WS  R+   +GSGLA PRA
Sbjct: 196 SRNWSAARQLQAIGSGLAAPRA 217


>01_02_0103 + 11153389-11153856
          Length = 155

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +1

Query: 94  RPWSSTMSGAEPTCCLRLSTLHKLLRISQY*VCDNLSIAWISIRILLPNTPILSIGC 264
           R WS+T+SG  PT  L  S    +L +     C     AW S  +LL      + GC
Sbjct: 89  RSWSATVSGVLPTNLLMTSVERCILAVLGVCGCVLTLAAWASADLLLAGKEEDAGGC 145


>12_02_0708 + 22338847-22339137,22339245-22339373
          Length = 139

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -2

Query: 486 MEPWARISNGRQRLGSAPGIAEVHGRR*PLTIRWAVCSSAYK--DNKKKEKNTRSKNQ 319
           ++ W+RI     ++  + G+   HG + P   R ++   A +  D KK++ ++  +NQ
Sbjct: 80  VDEWSRILKPTTKMVISMGVMSYHGAKQPFKTRASLVKEAQELWDKKKEDASSVERNQ 137


>12_01_0415 + 3292576-3293727
          Length = 383

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 494 SEQWSRGREFLTVGSGLALPRA 429
           S  WS  R+   +G+GLA PRA
Sbjct: 203 SRAWSASRQLQAIGAGLAAPRA 224


>12_01_0377 -
           2939384-2939505,2939629-2939695,2940324-2940543,
           2940655-2940731,2940813-2940878,2940970-2941018,
           2941131-2941181,2941262-2941314,2941432-2941486,
           2941563-2941651,2941742-2941827,2941933-2941989,
           2942086-2942275,2943847-2944005
          Length = 446

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +1

Query: 424 SNARGRAKPLPTVRNSRPRLHCSEC*LLSIPMSSIQVIEEVYLDHGNTSKSPNPQTTFIV 603
           S  R + + L    N++  L+ +E  + S+P    Q +  +   HG T + P+P    + 
Sbjct: 230 SEMRDKLRGLTEDENNQKWLYVTEDDIKSLPCFQNQTLIAIKAPHGTTLEVPDPDE--VN 287

Query: 604 KTRQRRYYLMAPS 642
              QRRY ++  S
Sbjct: 288 DYPQRRYRIVLRS 300


>03_02_0493 -
           8866685-8866888,8866989-8867059,8867143-8867416,
           8867666-8868036,8868127-8868482,8868558-8868630,
           8869307-8869412,8869667-8869760,8870616-8870680,
           8871655-8871927
          Length = 628

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 488 QWSRGREFLTVGSGLALPRALLKSMGDGNHSPSGG 384
           ++ RG  + +    L  PR + ++ GD  H+P GG
Sbjct: 285 KYIRGNNYASSSQRLDHPRRIKENKGDEGHNPKGG 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,309
Number of Sequences: 37544
Number of extensions: 369412
Number of successful extensions: 900
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)