Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0463
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25419| Best HMM Match : PH (HMM E-Value=2.8e-16)                    58   7e-09
SB_24057| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_12623| Best HMM Match : NAD_kinase (HMM E-Value=1.5e-09)            28   8.0  
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              28   8.0  
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)                 28   8.0  
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)                28   8.0  

>SB_25419| Best HMM Match : PH (HMM E-Value=2.8e-16)
          Length = 453

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 26/49 (53%), Positives = 35/49 (71%)
 Frame = +1

Query: 529 QVIEEVYLDHGNTSKSPNPQTTFIVKTRQRRYYLMAPSGEAGRIWIDVL 675
           Q IE+VY     ++K P+P+TTF VKT Q+ Y++ APSG A  IWIDV+
Sbjct: 394 QAIEDVYAASWCSNKGPSPRTTFCVKTPQKSYFIAAPSGLAMSIWIDVI 442


>SB_24057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 480 PWARISNGRQRLGSAPGIAEVHGRR*PLTIRWAVCSSAYKDNKKKEKNT 334
           PW+R    R   G +P   E   R   LT+R+ + SS   D ++  K T
Sbjct: 142 PWSRCRWTRMPFGISPASEEFQRRLDCLTLRFHIMSSKRSDGRRLSKAT 190


>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1429

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 396  TIRWA---VCSSAYKDNKKKEKNTRSKNQYHETSRCSCLLGEAAD 271
            T+RW    VC+S  KD+++  +   +  +    SRCS   GEA D
Sbjct: 1175 TLRWHDSFVCASLSKDSRQWSQKQLAIGEVSAGSRCSGSFGEAPD 1219


>SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 95  ARGRQQCQGLNQPVAYG*VLSTSSYVSRNIRYATIC 202
           ARGR Q +G NQ    G   + +S   R++ Y  IC
Sbjct: 93  ARGRPQARGYNQRSRRGYPRARASPRPRDVHYTNIC 128


>SB_12623| Best HMM Match : NAD_kinase (HMM E-Value=1.5e-09)
          Length = 155

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 259 LYSR*GCLVVKYEY*SRQWTNCRIPNIARY 170
           L SR  C++ KY   S +  NC+ PN+ RY
Sbjct: 41  LRSRLRCIITKYHTDSNE--NCKTPNMQRY 68


>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +3

Query: 219 YSYFTTKHPYLEYRLQSYQLLLPRGNYTLRSHDTDSSTWCFSLFFYCP 362
           Y  F+  H  L+Y   S  +L+ RG+  L        TW  S  F  P
Sbjct: 165 YGIFSKSHLDLQYLFMSPSILVARGSAILIRVSYSCRTWICSTSFMSP 212


>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
          Length = 404

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 95  ARGRQQCQGLNQPVAYG*VLSTSSYVSRNIRYATIC 202
           ARGR Q +G NQ    G   + +S   R++ Y  IC
Sbjct: 271 ARGRPQARGYNQRSRRGYPRARASPRPRDVHYTNIC 306


>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
          Length = 617

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +3

Query: 219 YSYFTTKHPYLEYRLQSYQLLLPRGNYTLRSHDTDSSTWCFSLFFYCP 362
           Y  F+  H  L+Y   S  +L+ RG+  L        TW  S  F  P
Sbjct: 103 YGIFSKSHLDLQYLFMSPSILVARGSAILIRVSYSCRTWICSTSFMSP 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,626,125
Number of Sequences: 59808
Number of extensions: 414519
Number of successful extensions: 1640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)