Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0463
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97003-7|AAB52274.1|  357|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL132876-29|CAF31497.1|  840|Caenorhabditis elegans Hypothetical...    28   5.3  
AL132876-27|CAD21658.1|  906|Caenorhabditis elegans Hypothetical...    28   5.3  
AY204188-1|AAO39192.1|  364|Caenorhabditis elegans nuclear recep...    28   7.0  
AF100669-6|AAM97937.1|  242|Caenorhabditis elegans Nuclear hormo...    28   7.0  
AF100669-5|AAU05545.1|  364|Caenorhabditis elegans Nuclear hormo...    28   7.0  
AF100669-4|AAM97936.1|  395|Caenorhabditis elegans Nuclear hormo...    28   7.0  
AC024750-4|AAF60438.2|  339|Caenorhabditis elegans Seven tm rece...    28   7.0  

>U97003-7|AAB52274.1|  357|Caenorhabditis elegans Hypothetical
           protein F47C10.4 protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 222 SYFTTKHPYLEYRLQSYQLLLPRGNYTLRSHDTDSSTWCF 341
           ++FT ++P LE  ++S QL L   +    SH+  SS WCF
Sbjct: 133 THFTYENPTLEDIIESRQLTLVVRD---PSHEMTSSDWCF 169


>AL132876-29|CAF31497.1|  840|Caenorhabditis elegans Hypothetical
           protein Y105E8A.7b protein.
          Length = 840

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 525 DTGDRRSVFRSRQHVEIAEPTDDVHSQN*TKTLLLNGSVRGSRPD 659
           D   R+++F+  QH + ++P   +   +  K L L+  V  S+P+
Sbjct: 17  DGNSRKTIFQCDQHFDESQPEGVIEFPSLPKQLALSHGVNNSKPE 61


>AL132876-27|CAD21658.1|  906|Caenorhabditis elegans Hypothetical
           protein Y105E8A.7a protein.
          Length = 906

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 525 DTGDRRSVFRSRQHVEIAEPTDDVHSQN*TKTLLLNGSVRGSRPD 659
           D   R+++F+  QH + ++P   +   +  K L L+  V  S+P+
Sbjct: 17  DGNSRKTIFQCDQHFDESQPEGVIEFPSLPKQLALSHGVNNSKPE 61


>AY204188-1|AAO39192.1|  364|Caenorhabditis elegans nuclear receptor
           NHR-104 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = +3

Query: 171 YLAILGMRQFVHCLD*YSYFTTKHPYLEYRLQSYQLLLPRGNYTLRSHDTDSSTWCFSLF 350
           Y  +  +R+ VH +D +S F    P  +   ++Y+LLL R  Y +    +D  + CF LF
Sbjct: 118 YAELENVREIVHRMDGFSMFLKPAPRGQTYKETYRLLL-REFYLV----SDWVSNCFPLF 172

Query: 351 FYCPCRQTSI 380
              P  Q  I
Sbjct: 173 KELPNSQKDI 182


>AF100669-6|AAM97937.1|  242|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 104, isoform b protein.
          Length = 242

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = +3

Query: 171 YLAILGMRQFVHCLD*YSYFTTKHPYLEYRLQSYQLLLPRGNYTLRSHDTDSSTWCFSLF 350
           Y  +  +R+ VH +D +S F    P  +   ++Y+LLL R  Y +    +D  + CF LF
Sbjct: 118 YAELENVREIVHRMDGFSMFLKPAPRGQTYKETYRLLL-REFYLV----SDWVSNCFPLF 172

Query: 351 FYCPCRQTSI 380
              P  Q  I
Sbjct: 173 KELPNSQKDI 182


>AF100669-5|AAU05545.1|  364|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 104, isoform c protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = +3

Query: 171 YLAILGMRQFVHCLD*YSYFTTKHPYLEYRLQSYQLLLPRGNYTLRSHDTDSSTWCFSLF 350
           Y  +  +R+ VH +D +S F    P  +   ++Y+LLL R  Y +    +D  + CF LF
Sbjct: 118 YAELENVREIVHRMDGFSMFLKPAPRGQTYKETYRLLL-REFYLV----SDWVSNCFPLF 172

Query: 351 FYCPCRQTSI 380
              P  Q  I
Sbjct: 173 KELPNSQKDI 182


>AF100669-4|AAM97936.1|  395|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 104, isoform a protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = +3

Query: 171 YLAILGMRQFVHCLD*YSYFTTKHPYLEYRLQSYQLLLPRGNYTLRSHDTDSSTWCFSLF 350
           Y  +  +R+ VH +D +S F    P  +   ++Y+LLL R  Y +    +D  + CF LF
Sbjct: 118 YAELENVREIVHRMDGFSMFLKPAPRGQTYKETYRLLL-REFYLV----SDWVSNCFPLF 172

Query: 351 FYCPCRQTSI 380
              P  Q  I
Sbjct: 173 KELPNSQKDI 182


>AC024750-4|AAF60438.2|  339|Caenorhabditis elegans Seven tm
           receptor protein 173 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 188 YATICPLPGLVFVFYYQTPL 247
           Y  I PLP L FV YY+ P+
Sbjct: 297 YPAIDPLPNLFFVDYYRNPI 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,167,805
Number of Sequences: 27780
Number of extensions: 297016
Number of successful extensions: 806
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)