Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0463
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c...    30   1.6  
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c...    30   1.6  
At3g59250.1 68416.m06605 F-box family protein contains F-box dom...    28   6.5  

>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 313 MILILRPGXXXXXXXXXXGRRAYGPPDGEWLPSPMDFSN 429
           M  +LR G          GR    P  GEW P+P D S+
Sbjct: 306 MATMLRSGGQLIWIAPSGGRDRPNPSTGEWFPAPFDASS 344


>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 313 MILILRPGXXXXXXXXXXGRRAYGPPDGEWLPSPMDFSN 429
           M  +LR G          GR    P  GEW P+P D S+
Sbjct: 306 MATMLRSGGQLIWIAPSGGRDRPNPSTGEWFPAPFDASS 344


>At3g59250.1 68416.m06605 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 425

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 133 CCLRLSTLHKLLRISQY*VCDNLSIAWISIRILLPNTPIL 252
           CC  +   + L++++   +  N S+ W S+  LL N PIL
Sbjct: 276 CCESIPVFNNLIQLT---IKTNQSVGWESLPALLKNCPIL 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,388,706
Number of Sequences: 28952
Number of extensions: 277244
Number of successful extensions: 682
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)