Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0461
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    28   1.5  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   7.8  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   7.8  

>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 344 HFKNKLLIIQISPGIVQSNVDNSRKNNEWAST 249
           H     + +Q    ++ + +D  RKNN+W+ST
Sbjct: 479 HGHGDAIALQYGGSLLVNTLDTYRKNNQWSST 510


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 476 NYYQHRIWVRT 508
           N+Y HR+W+RT
Sbjct: 557 NHYSHRVWLRT 567


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 588 ERLIHEQKINLKLVQITKKMYEEFFLIV 505
           +R I  +  + KLVQ  +K YEEF++ V
Sbjct: 140 KRTIKAEYESSKLVQPEQKSYEEFYMAV 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,734
Number of Sequences: 5004
Number of extensions: 52822
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)