Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0461
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_15188| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_40349| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_31451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_45963| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 264 VVLSAVIDIGLHNARANLNN*KLVFKMFDNETIMKNIFVFYLSHFALFIVIL 419
           V L  V D+ +   RA L   K+ FK+F   T + + FVFY +   LF+ ++
Sbjct: 104 VNLLTVFDVFVEFGRAGLAIPKVNFKIFSVYTELNSGFVFYSTCELLFVFLM 155


>SB_15188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 327 KLVFKMFDNETIMKNIFVFYLSHFALFIVILYFYISKRTRFCNLN 461
           K  F   D+E +++ + +  +SH AL ++   +Y+S R + C +N
Sbjct: 15  KKAFDTVDHEILLRKMQILGISHDALSLI--NYYLSGRKQVCQVN 57


>SB_40349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 315 LNN*KLVFKMFDNETIMKNIFVFYLSHFALFIVILYFYISKRTRFCNLN 461
           L N K  F   D+E +++ + +  +SH AL ++    Y+S R + C +N
Sbjct: 11  LLNLKKAFDTVDHEILLRKMQILGISHDALSLI--KSYLSGRKQVCQVN 57


>SB_31451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 315 LNN*KLVFKMFDNETIMKNIFVFYLSHFALFIVILYFYISKRTRFCNLN 461
           L N K  F   D+E +++ + +  +SH AL ++    Y+S R + C +N
Sbjct: 11  LLNLKKAFDTVDHEILLRKMQILGISHDALSLI--KSYLSGRKQVCQVN 57


>SB_45963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 327 KLVFKMFDNETIMKNIFVFYLSHFALFIVILYFYISKRTRFCNL 458
           K  F   D+E +++ + +  +SH AL ++   +Y+S R + C L
Sbjct: 15  KKAFDTVDHEILLRKMQILGISHDALSLI--KYYLSGRKQVCQL 56


>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 451 QKRVRLDI*KYKITINNAKCDR*NTKIFFII 359
           Q  VR+DI +YK  I   +C + NT +F ++
Sbjct: 187 QDAVRIDILRYKEVIAIDRCFKTNTSVFLLV 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,318,762
Number of Sequences: 59808
Number of extensions: 376610
Number of successful extensions: 871
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)