Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0461
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82084-7|CAB04979.2|  499|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z83129-5|CAB05643.1|  349|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z83129-3|CAB05641.1|  300|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z81476-10|CAN86579.1|  224|Caenorhabditis elegans Hypothetical p...    27   9.6  

>Z82084-7|CAB04979.2|  499|Caenorhabditis elegans Hypothetical
           protein ZK1053.6 protein.
          Length = 499

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 217 GT*NSQDCYLKLRQSALIHYTLNTRLPFLHTLYLYCII 104
           G  N  D YL++R++A +   L+  +  L  L  YCI+
Sbjct: 139 GEFNEPDIYLRVRKNAAVAQALSILICILTNLISYCIV 176


>Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical
           protein T08G3.5 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = +2

Query: 380 VLSITFRIIYCYFVFLYI*ANTFLQFKYVNTINYYQHRIWVRTIKKNSSYIFFVICTNF 556
           VL+    +I C+F FL+I     + F     IN ++ +   +   +     F  +C  F
Sbjct: 189 VLACANTVIICFFTFLFIGWIQVVGFFLATAINIHKGKTLSKKASQMQKQFFIALCIQF 247


>Z83129-5|CAB05643.1|  349|Caenorhabditis elegans Hypothetical
           protein W06G6.8 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = -3

Query: 559 FKISANYKKNVRRIFF-NRPYPNTVLIVINSIHI-FKL 452
           F +S NY+K  + +FF NR   +T ++ +N +H+ FKL
Sbjct: 313 FSMSTNYRKAAKMVFFANRKQSSTSVLSVN-LHLEFKL 349


>Z83129-3|CAB05641.1|  300|Caenorhabditis elegans Hypothetical
           protein W06G6.6 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 559 FKISANYKKNVRRIFF-NRPYPNTVLIVIN 473
           F +S NY+K  + +FF NR   NT ++ IN
Sbjct: 270 FSMSTNYRKAAKMVFFANRKQMNTSVLPIN 299


>Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical
           protein T21E8.3 protein.
          Length = 1243

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 389 ITFRIIYCYFVFLYI*ANTFLQFKYV--NTINYYQHRIWVRTIKKNSSYIFFVICTNF 556
           I F ++ C F+F       F  FKY+  NT    +H+  +R +KK++ Y F  I T +
Sbjct: 101 IHFGLVGCAFMFFGF--IQFSLFKYIGDNTTYRLRHKFILRLLKKDAKY-FDTISTGY 155


>Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical
           protein T21E8.3 protein.
          Length = 1243

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 389 ITFRIIYCYFVFLYI*ANTFLQFKYV--NTINYYQHRIWVRTIKKNSSYIFFVICTNF 556
           I F ++ C F+F       F  FKY+  NT    +H+  +R +KK++ Y F  I T +
Sbjct: 101 IHFGLVGCAFMFFGF--IQFSLFKYIGDNTTYRLRHKFILRLLKKDAKY-FDTISTGY 155


>Z81476-10|CAN86579.1|  224|Caenorhabditis elegans Hypothetical
           protein C25F9.13 protein.
          Length = 224

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/37 (35%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
 Frame = +3

Query: 384 YLSHFALFIVILYFYI--SKRTRFCNLNM*ILLITIS 488
           ++S+F +F+ IL+F I  +K+ R+ ++N+ ++ I IS
Sbjct: 25  FISYFGVFLNILHFIILCNKKLRYQSVNVLLIGIAIS 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,843,863
Number of Sequences: 27780
Number of extensions: 300251
Number of successful extensions: 788
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)