Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0461
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78530.1 68414.m09153 protein kinase family protein contains ...    30   1.7  
At4g10640.1 68417.m01738 calmodulin-binding family protein conta...    28   6.7  

>At1g78530.1 68414.m09153 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 355

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 386 IKHENI--LHYRFVIKHFKNKLLIIQISPGIVQSNVDNSRKNNEWASTY 246
           IKH NI  LH  F   H+   LLI ++ P     +  + RK  +WAS Y
Sbjct: 126 IKHRNIVTLHGYFTSPHYN--LLIYELMPNGSLDSFLHGRKALDWASRY 172


>At4g10640.1 68417.m01738 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 423

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/70 (21%), Positives = 37/70 (52%)
 Frame = -2

Query: 353 VIKHFKNKLLIIQISPGIVQSNVDNSRKNNEWASTY*CYLNDTLIRHVK*SRLLFKTTSK 174
           V+ H + +   + +SP     N++ +R+N+ +A +   +   T ++ ++  R L +  ++
Sbjct: 158 VLNHHQQQRSRVLLSPPSRNYNIE-ARRNSMFAESNGFWDTKTYLQDIRSRRSLSRDMNR 216

Query: 173 CTHTLYSKYT 144
           C +  YS+ T
Sbjct: 217 CNNEFYSEET 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,197,002
Number of Sequences: 28952
Number of extensions: 245236
Number of successful extensions: 448
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)