Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0460
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p... 103 3e-23
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 30 0.31
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi... 29 0.54
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 27 2.2
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 27 3.8
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 26 5.1
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 5.1
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 6.7
>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 103 bits (247), Expect = 3e-23
Identities = 49/212 (23%), Positives = 112/212 (52%), Gaps = 4/212 (1%)
Frame = +3
Query: 135 TEYWVISAPG-DKTCQQTWDTLNNATKSGNLS-VNYIFP--IPDLKVGTLDQLVGLSDDL 302
+++W++S P + D + SG+ S ++ + P +P KV +LD L+ S+ L
Sbjct: 4 SDFWILSVPSRGGSNADLCDDIERLLVSGSTSLISTVAPFDVPPFKVESLDVLISQSEQL 63
Query: 303 GKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSL 482
K D K++ + + L + M + Y++ F W+ +++ + +++
Sbjct: 64 TKQDAQCASAISKISDIIKNTVSSSSGDLKDYFMVQDKSPLEYVSSFAWNSSRFHMNKTI 123
Query: 483 RNIADIISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILD 662
I+D I+ ++ + D++ + +++ N++KKQ+G+L ++LA++V +E +
Sbjct: 124 SEISDRITSEIISFENDIRTRQTSFQQASSAFQNMQKKQSGNLSQKSLANIVHEEDVVHG 183
Query: 663 SEYLTTLLVIVPKSMFNDWNANYEKITDMIVP 758
S+YLT + + VP ++ + +YE +TD+++P
Sbjct: 184 SDYLTNVFIAVPLNLEKQFLNSYETLTDLVIP 215
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 30.3 bits (65), Expect = 0.31
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = -3
Query: 337 LVTPSTKVSSLPRSSDSPTN*SKVPTLRSGIGNI*LTLRLPDLVALFRVSQVC*QVLSPG 158
L PS V SLPR+S+SP+ P + I + D+ A F SQ +
Sbjct: 734 LSAPSD-VGSLPRASNSPSR----PVMHPNTQGI--NTEIKDMAAQFPNSQTGGLTPNSW 786
Query: 157 ALITQYSVIFTTKNLKINAV-YNKLSETAN 71
++ T SV FTT+N + + + +S T N
Sbjct: 787 SMNTNVSVPFTTQNREFGGIGSSSISTTMN 816
>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 29.5 bits (63), Expect = 0.54
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 471 KQSLRNIADIISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKE 647
K +NIA + V +I D V+ N +KG L K+ + NL D+ K+E
Sbjct: 218 KNKQQNIAGVQGTMVTKIGYDELVRQGDSNLMKGTGTKLNGKEVAEVPKINLLDVEKQE 276
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 97 YNKLSETANNFGETTSNSG 41
Y KLS+T+NN TT++SG
Sbjct: 335 YKKLSDTSNNTKSTTASSG 353
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 231 NYIFPIPDLKVGTLDQLVGLSD--DLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLM 404
N FP+ LK Q+ SD + GKL +G+ +K +Y + + D L
Sbjct: 68 NEFFPLLSLKKEITLQIERCSDPNERGKLVNEAKGLKKKTEEYNKIISKVTNDLYQYCLA 127
Query: 405 ANNSDLPT 428
N+ LPT
Sbjct: 128 VPNTTLPT 135
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +3
Query: 549 SAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWNAN 728
S ++ L + H +E K L L + + +Y LL I K ND+ A
Sbjct: 194 SKFSKLGPSEHEIEVKHFAKEFESILRYLYLDTNAVFTKQYNNALLSIGKKFQLNDFIAL 253
Query: 729 YEK 737
YEK
Sbjct: 254 YEK 256
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.2 bits (55), Expect = 5.1
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +3
Query: 222 LSVNYIFPIPDLKVGTLDQL--VGLSDDLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHE 395
+ + Y+FP KV TLD L + F++ + QYL + QRD + E
Sbjct: 415 IRIVYLFP----KVSTLDNSFKTKLPNCNSSSFDFLKAPLFQTLQYLFRLYPYQRDFIIE 470
Query: 396 NLMANNSDLPT 428
+ N S LPT
Sbjct: 471 ESLTNFSHLPT 481
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 336 RKVAQYLGEVLEDQRDKLHENLMAN 410
+KVAQ L E+L DQR L + +AN
Sbjct: 921 KKVAQRLTELLSDQRVHLPSSKIAN 945
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,423
Number of Sequences: 5004
Number of extensions: 64518
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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