Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0460
(759 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024762-2|AAF59474.3| 384|Caenorhabditis elegans Vacuolar h at... 250 8e-67
AB009567-1|BAA75067.1| 384|Caenorhabditis elegans Vha11 protein... 250 8e-67
AC024762-3|AAO91689.2| 133|Caenorhabditis elegans Vacuolar h at... 114 7e-26
Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81065-2|CAB02967.2| 310|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z81575-7|CAB04638.1| 367|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z82282-5|CAB05270.1| 555|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z82278-6|CAB05258.1| 690|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z82052-1|CAB04823.1| 300|Caenorhabditis elegans Hypothetical pr... 28 8.3
AL117204-6|CAB55149.2| 833|Caenorhabditis elegans Hypothetical ... 28 8.3
>AC024762-2|AAF59474.3| 384|Caenorhabditis elegans Vacuolar h
atpase protein 11, isoforma protein.
Length = 384
Score = 250 bits (612), Expect = 8e-67
Identities = 116/207 (56%), Positives = 151/207 (72%)
Frame = +3
Query: 138 EYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYIFPIPDLKVGTLDQLVGLSDDLGKLDT 317
EYW+IS PG+K WD LN +T GN S N + IPDLKVGTLDQLVGLSDDL KLDT
Sbjct: 8 EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDT 65
Query: 318 FVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIAD 497
E V RK+ QY EVLE+ + K+ ENL+ N D+ TY+T+FQW+ AKYP+KQSL+ +++
Sbjct: 66 SAEAVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLKVLSE 125
Query: 498 IISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLT 677
II KQ+ QID DLKVKS YN LK L ++++K GSLLT++LADLVK + F+L+SEYL
Sbjct: 126 IIGKQISQIDNDLKVKSLTYNNLKNALASMDRKTVGSLLTKDLADLVKADDFVLNSEYLQ 185
Query: 678 TLLVIVPKSMFNDWNANYEKITDMIVP 758
T++V+VPK +W Y ++ M+VP
Sbjct: 186 TVIVVVPKISVKEWEQKYATLSSMVVP 212
>AB009567-1|BAA75067.1| 384|Caenorhabditis elegans Vha11 protein
protein.
Length = 384
Score = 250 bits (612), Expect = 8e-67
Identities = 116/207 (56%), Positives = 151/207 (72%)
Frame = +3
Query: 138 EYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYIFPIPDLKVGTLDQLVGLSDDLGKLDT 317
EYW+IS PG+K WD LN +T GN S N + IPDLKVGTLDQLVGLSDDL KLDT
Sbjct: 8 EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDT 65
Query: 318 FVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIAD 497
E V RK+ QY EVLE+ + K+ ENL+ N D+ TY+T+FQW+ AKYP+KQSL+ +++
Sbjct: 66 SAEAVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLKVLSE 125
Query: 498 IISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLT 677
II KQ+ QID DLKVKS YN LK L ++++K GSLLT++LADLVK + F+L+SEYL
Sbjct: 126 IIGKQISQIDNDLKVKSLTYNNLKNALASMDRKTVGSLLTKDLADLVKADDFVLNSEYLQ 185
Query: 678 TLLVIVPKSMFNDWNANYEKITDMIVP 758
T++V+VPK +W Y ++ M+VP
Sbjct: 186 TVIVVVPKISVKEWEQKYATLSSMVVP 212
>AC024762-3|AAO91689.2| 133|Caenorhabditis elegans Vacuolar h
atpase protein 11, isoformb protein.
Length = 133
Score = 114 bits (274), Expect = 7e-26
Identities = 55/92 (59%), Positives = 64/92 (69%)
Frame = +3
Query: 138 EYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYIFPIPDLKVGTLDQLVGLSDDLGKLDT 317
EYW+IS PG+K WD LN +T GN S N + IPDLKVGTLDQLVGLSDDL KLDT
Sbjct: 8 EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDT 65
Query: 318 FVEGVTRKVAQYLGEVLEDQRDKLHENLMANN 413
E V RK+ QY EVLE+ + K+ ENL+ N
Sbjct: 66 SAEAVIRKLVQYFTEVLEEDKSKIAENLVIGN 97
>Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical
protein T05E11.3 protein.
Length = 760
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 588 EKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWNANYEKITDMI 752
E KQ +T++ + + HF + E ++ VPK ND NY K+ + I
Sbjct: 333 EYKQFYKSITKDSEEPLSHVHFSAEGEVSFRSILYVPKKSPNDMFQNYGKVIENI 387
>Z81065-2|CAB02967.2| 310|Caenorhabditis elegans Hypothetical
protein F16C3.2 protein.
Length = 310
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 151 ITQYSVIFTTKNLKINAVYNKLSETANNFGE 59
I++YSV+ N KIN+VYN +T + E
Sbjct: 198 ISEYSVLREKVNNKINSVYNSAIQTVKSLKE 228
>Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical
protein F35G12.10 protein.
Length = 301
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 429 YLTRFQWDMAKYPIKQSLRNIADIISKQVGQIDADLKVKSSAYNALKG 572
YL + A++ Q L+ I D + KQV Q D K +A LKG
Sbjct: 251 YLKETEETKARFERDQLLKLINDSVEKQVSQKDFQEKFLQNAIQQLKG 298
>Z81575-7|CAB04638.1| 367|Caenorhabditis elegans Hypothetical
protein R08H2.8 protein.
Length = 367
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 261 VGTLDQLVGLSDDLGKLDTFVEGVTR 338
VG D + GL GKL+ F+ GVT+
Sbjct: 161 VGQYDYITGLEGSSGKLNVFMGGVTK 186
>Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical
protein M04C3.2 protein.
Length = 606
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Frame = +3
Query: 567 KGNLHNLEKKQT-GSLLTRNLADLVKKE---HFILDS-----EY---LTTLLVIVPKSMF 710
K NL EK+ G ++T + D++ KE F+LD EY + L++VP M
Sbjct: 234 KSNLAQREKEPVRGGIITTLIRDILIKETIIEFLLDQKNTSEEYGHSMGKTLLVVPPDMI 293
Query: 711 NDWNANYEKITD 746
W EK+ +
Sbjct: 294 ESWKKLLEKLLE 305
>Z82282-5|CAB05270.1| 555|Caenorhabditis elegans Hypothetical
protein T07G12.5 protein.
Length = 555
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +3
Query: 309 LDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPT----YLTRFQWDMAKYPIKQ 476
LD G TR+ ++ E+ ED + + N LP+ + R+ W + P+
Sbjct: 467 LDNITGGATRRQRGFVSEIDEDDDVEEQATVEMNGYALPSKLNQFFLRYSW-LTYLPVIP 525
Query: 477 SLRNIADIISK 509
S R I +I K
Sbjct: 526 SEREIREIEEK 536
>Z82278-6|CAB05258.1| 690|Caenorhabditis elegans Hypothetical
protein M162.7 protein.
Length = 690
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = +3
Query: 246 IPDLKVGTLDQLVGLSDDLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLP 425
+ D+ + + +L+GL D K DTF+ +T + ++ ++ + N S L
Sbjct: 101 LKDISMESSKELIGLGSDAFKYDTFIHNLTSVRDSFKFPGKDEYYAEVESVMKFNMSKLE 160
Query: 426 TYLTRFQ 446
+ FQ
Sbjct: 161 DVMNEFQ 167
>Z82052-1|CAB04823.1| 300|Caenorhabditis elegans Hypothetical
protein T25E12.5 protein.
Length = 300
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +3
Query: 132 MTEYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYIFPIPDLKVGTLDQLVGLSDDLGKL 311
MTE W+ A D+ Q LN+ SG + ++ ++LV D++ +
Sbjct: 1 MTEAWITLATNDRYAQGALTLLNSLHASGTTRRIHCLITNEISNSVREKLVNKFDEVTVV 60
Query: 312 DTF 320
D F
Sbjct: 61 DIF 63
>AL117204-6|CAB55149.2| 833|Caenorhabditis elegans Hypothetical
protein Y116A8C.13 protein.
Length = 833
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 684 LVIVPKSMFNDWNANYEK 737
L+IVP S+ N+W A ++K
Sbjct: 270 LIIVPSSLVNNWKAEFDK 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,504,746
Number of Sequences: 27780
Number of extensions: 372970
Number of successful extensions: 1251
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -