Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0459
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    27   1.9  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   4.3  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   5.7  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   7.6  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   7.6  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   7.6  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    25   7.6  

>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 166 RYVCSFTAGSQQTNSVHGICACSGAATVFRR 74
           R++ + ++  + T SVH IC CS  +T+F R
Sbjct: 227 RFIHTLSSLIKCTTSVHLICMCSVPSTLFSR 257


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 430 VAATPALSSIREDFMLFIMCI*YSMFRRFNRFV 528
           +A+TP +S + ED+++ +    YSMF+   + +
Sbjct: 588 IASTP-MSKLYEDYLVMLFAFHYSMFQVMTKLI 619


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 10   GLQESARGAQISECPAVVEAVSAGTPSQRHCTHIFHEHYLFVV 138
            GL+ +  G +I  C A+ E +++ TP Q     I+ + +++ V
Sbjct: 1952 GLESANSGDRIGVCIALEELINSATPEQ---LEIYSDDFVYAV 1991


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -3

Query: 348 GDESGRSSREKRVRNYVSVS---FTTCQRPHRSLENNESVSVAGARSEAVVRT 199
           G+ + R S+ ++ +N  S+S   F+T    HR         V  A   AV+R+
Sbjct: 2   GNNTSRRSQSQKFKNIPSISAGSFSTMPVQHRGRRRRSKSIVGRAAQNAVLRS 54


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 390 APLRPYRVCRVGER 431
           APL P   CRVGER
Sbjct: 103 APLNPIDACRVGER 116


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 363 SVITSGDESGRSSREKRVRNYVS 295
           S+ +S   + RSS  +++RNY+S
Sbjct: 256 SITSSAKSNSRSSLSQKIRNYIS 278


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 390 RRDVHTKSHSVITSGDESGRSSREKRVRNYVSVS 289
           R  +HT +H  +T+    G   R   VR Y ++S
Sbjct: 179 RTHIHTTTHGELTTKLLIGADGRNSIVRKYANIS 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,025
Number of Sequences: 5004
Number of extensions: 49648
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)