Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0459
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783...    31   0.64 
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120...    29   4.5  
01_03_0126 + 12741397-12743022                                         29   4.5  
01_06_1284 + 35994595-35995074                                         28   7.8  

>05_04_0355 -
           20577189-20577275,20578001-20578129,20578252-20578371,
           20578505-20578741,20578983-20579258,20579375-20579508,
           20580006-20581632
          Length = 869

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 195 WVLCRYHNRVVTCVVSLRDHNKQIVFMEYVRAVALRRCSGAYSFH-DGWALGDLRASC 25
           W+L   H+R V+C++  R   ++ V +  +R V +  C      H +G  LG +   C
Sbjct: 241 WLLSERHSRGVSCLLEERSRREETVAL--IRNVGMEVCEAFMGLHGEGLVLGCIGLGC 296


>09_06_0260 -
           21911358-21911438,21911715-21911828,21911911-21912033,
           21912342-21912419,21912498-21912647,21913505-21913601,
           21913679-21913860,21913899-21913982,21914243-21914303,
           21914414-21914506,21914588-21914782,21914937-21915006,
           21915536-21915572,21915654-21915737,21915828-21915885,
           21916008-21916084,21916185-21916244,21916325-21916687
          Length = 668

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -3

Query: 483 YEQHKVLSDGAQRWS----GGYALRHDIHGTVATARRDVHTKSHSVITSGDESGRSSREK 316
           Y QHK+     + WS    GGY     + G      RDVH   H+++        S+ E 
Sbjct: 596 YVQHKMAEKAPEIWSIISQGGYIY---VCGDAKGMARDVHRTLHTIVQEQGSLDNSNTES 652

Query: 315 RVRN 304
            V++
Sbjct: 653 YVKS 656


>01_03_0126 + 12741397-12743022
          Length = 541

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 98  WRCDGVPALTASTTAGHSEICAPRADSCSP 9
           W C GV    A+  A     C+P A S SP
Sbjct: 65  WHCTGVVDAAAAAAADSGSSCSPPAASASP 94


>01_06_1284 + 35994595-35995074
          Length = 159

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -2

Query: 190 LMQISQPCRYVCSFTAGSQQTNSVHGICACSGAATVFRRLQLPRRLGTRRSARLVPIPAA 11
           L+ +S P       T+ S  T  V     CS     F+ L   R   TR  A+L+  PAA
Sbjct: 11  LLSLSSPAASASQPTSSSSTTEGVFECKTCSKRFPSFQALGGHRTSHTRLQAKLLSDPAA 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,699,093
Number of Sequences: 37544
Number of extensions: 376040
Number of successful extensions: 1217
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)