Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0459
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        34   0.12 
SB_1646| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.16 
SB_59329| Best HMM Match : Myosin_tail_2 (HMM E-Value=1.1e-33)         29   2.6  
SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24)                   29   3.4  
SB_50320| Best HMM Match : PHR (HMM E-Value=0.042)                     28   7.9  
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 24/113 (21%), Positives = 57/113 (50%)
 Frame = -3

Query: 423  RHDIHGTVATARRDVHTKSHSVITSGDESGRSSREKRVRNYVSVSFTTCQRPHRSLENNE 244
            R ++H  +   RR+V  +S +V+    E    +REK   + ++V   + +R +R+L   E
Sbjct: 760  RDNLHDELVQTRREVERQSTNVVRLAKEKEELTREK---SSLTVQVNSSERENRALA--E 814

Query: 243  SVSVAGARSEAVVRTYWVLCRYHNRVVTCVVSLRDHNKQIVFMEYVRAVALRR 85
            +++   +  E++    + L +   ++ +   +L   N++++  +   AV L+R
Sbjct: 815  NIASMKSEKESLETALYELQQTSTKLESRKEALEAENQELLLAKEALAVDLQR 867


>SB_1646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 519 IKPPKHTVLYTHYEQHKVLSDGAQRWSGGYALRHDIHGT 403
           I P  HT+  +H   H+  S G Q  +GGY +RH + G+
Sbjct: 229 ISPSSHTLPRSHRSFHE--SSGIQALAGGYPIRHSVSGS 265


>SB_59329| Best HMM Match : Myosin_tail_2 (HMM E-Value=1.1e-33)
          Length = 218

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 3/114 (2%)
 Frame = -3

Query: 447 RWSGGYALRHDIHGTVATARRDVHTKSHSVITSG---DESGRSSREKRVRNYVSVSFTTC 277
           RW G Y    D +      +R VHTK+ +VI S      +  S  E R       +    
Sbjct: 41  RWMGDYLALSDENPETELYKRCVHTKAGTVIFSSRVQKINKHSKEESRTLVLTENAILKM 100

Query: 276 QRPHRSLENNESVSVAGARSEAVVRTYWVLCRYHNRVVTCVVSLRDHNKQIVFM 115
              ++ L+      +      A      ++   HN +V C+++ +  N+ + FM
Sbjct: 101 DSKYKVLKTIPLDKITSLTVSAGQDQLIIVHIPHNDLVVCLLNNKKANRVVEFM 154


>SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24)
          Length = 467

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 340 LVSRCNNRMAFSVYVASRRCDRTVYVVSESVAATPALS 453
           +VS+CN    F  +VA R  D     + E V  TP LS
Sbjct: 349 VVSQCNFGKTFLSWVAGRDLDEIALKLPEPVRVTPGLS 386


>SB_50320| Best HMM Match : PHR (HMM E-Value=0.042)
          Length = 310

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 340 LVSRCNNRMAFSVYVASRRCDRTVYVVSESVAATPALS 453
           +VS+CN    F  +VA    D     + E V  TPALS
Sbjct: 139 VVSQCNFGKTFLSWVAGGYLDEIALKLPEPVRVTPALS 176


>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/79 (17%), Positives = 38/79 (48%)
 Frame = -3

Query: 462  SDGAQRWSGGYALRHDIHGTVATARRDVHTKSHSVITSGDESGRSSREKRVRNYVSVSFT 283
            ++  Q W+GG    + + G   T+ ++++    S +    +    +R++  +N  +   +
Sbjct: 1507 NETTQTWTGGKTWGYSLPGCNRTSIKNIN---RSCVNEASDRPAKNRQRVFQNGANFCGS 1563

Query: 282  TCQRPHRSLENNESVSVAG 226
             C++  +++ + E   VAG
Sbjct: 1564 ICKKSSKAMLSGEQSFVAG 1582


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,439,431
Number of Sequences: 59808
Number of extensions: 436397
Number of successful extensions: 1165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)