SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0459
         (674 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118547-1|AAM49916.1|  335|Drosophila melanogaster LD30049p pro...    30   2.5  
AE014296-413|AAF47612.1|  335|Drosophila melanogaster CG5704-PA ...    30   2.5  

>AY118547-1|AAM49916.1|  335|Drosophila melanogaster LD30049p
           protein.
          Length = 335

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
 Frame = -3

Query: 519 IKPPKHTVLYTHYEQHKVLSDGAQRWSGGYALRHDIHGTVATAR---------RDVHTKS 367
           I+PP     YTH +  KVL+ G+         +H +H  +A ++         RD+  K 
Sbjct: 163 IEPPS----YTHNQLGKVLAAGSFNSVSPELAKHLLHRQLAKSKLYPERFYFTRDIRVKY 218

Query: 366 HSVITSGDESGRSSREKRVRN-YVSVSFTTCQRPHRSLENNESVSV 232
           +  I   D  G     + ++  Y+ +  +    P+ S+ NNE++S+
Sbjct: 219 YHYIDIDDSLGAEMARRIIKKPYLIIKGSL--SPYLSVRNNEAISI 262


>AE014296-413|AAF47612.1|  335|Drosophila melanogaster CG5704-PA
           protein.
          Length = 335

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
 Frame = -3

Query: 519 IKPPKHTVLYTHYEQHKVLSDGAQRWSGGYALRHDIHGTVATAR---------RDVHTKS 367
           I+PP     YTH +  KVL+ G+         +H +H  +A ++         RD+  K 
Sbjct: 163 IEPPS----YTHNQLGKVLAAGSFNSVSPELAKHLLHRQLAKSKLYPERFYFTRDIRVKY 218

Query: 366 HSVITSGDESGRSSREKRVRN-YVSVSFTTCQRPHRSLENNESVSV 232
           +  I   D  G     + ++  Y+ +  +    P+ S+ NNE++S+
Sbjct: 219 YHYIDIDDSLGAEMARRIIKKPYLIIKGSL--SPYLSVRNNEAISI 262


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,832,901
Number of Sequences: 53049
Number of extensions: 610708
Number of successful extensions: 1660
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1660
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -