Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0459
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 30 1.3
U67949-1|AAL06028.2| 633|Caenorhabditis elegans Hypothetical pr... 29 2.3
U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormon... 29 3.0
U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormon... 29 3.0
AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear recep... 29 3.0
Z92813-7|CAB07283.2| 758|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z48717-8|CAA88609.1| 518|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z83235-7|CAD57703.1| 486|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z81050-12|CAN86586.1| 420|Caenorhabditis elegans Hypothetical p... 27 9.2
Z81050-11|CAN86585.1| 399|Caenorhabditis elegans Hypothetical p... 27 9.2
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 27 9.2
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 27 9.2
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 27 9.2
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 9.2
U40029-5|AAA81125.2| 457|Caenorhabditis elegans Hypothetical pr... 27 9.2
U40029-4|ABD94116.1| 471|Caenorhabditis elegans Hypothetical pr... 27 9.2
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -2
Query: 223 SIGGCGPNLLGLMQISQPCRYVCSFTAGSQQTNSVHGICACSGAATVF----RRLQLPRR 56
S G C N+ + + P S + VHGIC C T+F +RL++ +
Sbjct: 971 SDGACVKNVAKIKVVVPPLSSCLGGEECSGNSECVHGICFCKEEFTLFEGKCQRLRIIEK 1030
Query: 55 LGTRRSARLV-PIPA 14
L S +L+ PI A
Sbjct: 1031 LTVLESKKLIKPIKA 1045
>U67949-1|AAL06028.2| 633|Caenorhabditis elegans Hypothetical
protein F55A4.10 protein.
Length = 633
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 378 HTKSHSVITSGDESGRSSREKRVRNYVSVSFTTCQRPHRSLENNESV 238
H ++ TS + S SS + R +SV +T + H+S EN+ES+
Sbjct: 148 HPEAEIRTTSSNSSDLSSSISQSRASLSVDESTKESMHQSFENSESI 194
>U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform b protein.
Length = 413
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 172 PCRYVCSFTAGSQQTNSVHGICACSGAATVFRRLQLPR 59
PC VC A T +G+ AC G T FRR+ L +
Sbjct: 36 PCCLVCGRVAN---TGHHYGVTACLGCKTFFRRVVLQK 70
>U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform a protein.
Length = 429
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 172 PCRYVCSFTAGSQQTNSVHGICACSGAATVFRRLQLPR 59
PC VC A T +G+ AC G T FRR+ L +
Sbjct: 36 PCCLVCGRVAN---TGHHYGVTACLGCKTFFRRVVLQK 70
>AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear receptor
NHR-105 protein.
Length = 429
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 172 PCRYVCSFTAGSQQTNSVHGICACSGAATVFRRLQLPR 59
PC VC A T +G+ AC G T FRR+ L +
Sbjct: 36 PCCLVCGRVAN---TGHHYGVTACLGCKTFFRRVVLQK 70
>Z92813-7|CAB07283.2| 758|Caenorhabditis elegans Hypothetical
protein T28A8.7 protein.
Length = 758
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 304 VPHPLLSATSTALVSRCNNRMAFSVYVASR--RCDRTVYVVSESVAA 438
+ P+ SAT+ +R +R FSV++ R RCD + + E + A
Sbjct: 240 ISKPIASATAAIAQNRKTSRSFFSVFINGRSVRCDILKHPIDEVLGA 286
>Z48717-8|CAA88609.1| 518|Caenorhabditis elegans Hypothetical
protein T10B9.10 protein.
Length = 518
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 290 RLPLVNDHIVRWKTTRALVSPALDRRLWSELTGSYADITTVSLR 159
R+PLV RWK R L SP + ++ G+ + T +R
Sbjct: 114 RVPLVAAQGHRWKRLRTLASPTFSNKSLRKIMGTVEESVTELVR 157
>Z83235-7|CAD57703.1| 486|Caenorhabditis elegans Hypothetical
protein K10C3.6d protein.
Length = 486
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -2
Query: 199 LLGLMQISQPCRYVCSFTAGSQQTNSVHGICACSGAATVFRRLQL 65
++ +M + P C+ G + T + +G+ +C+G FRR L
Sbjct: 6 MIVIMDLVDPLAEPCA-VCGDKSTGTHYGVISCNGCKGFFRRTVL 49
>Z81050-12|CAN86586.1| 420|Caenorhabditis elegans Hypothetical
protein C50B6.14b protein.
Length = 420
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 151 FTAGSQQTNSVHGICACSGAATVFRRLQLPRRLGT 47
F G + + + AC+G T FRR + +RL T
Sbjct: 31 FVCGGSASGYHYDVPACNGCKTFFRRYVISKRLFT 65
>Z81050-11|CAN86585.1| 399|Caenorhabditis elegans Hypothetical
protein C50B6.14a protein.
Length = 399
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 151 FTAGSQQTNSVHGICACSGAATVFRRLQLPRRLGT 47
F G + + + AC+G T FRR + +RL T
Sbjct: 31 FVCGGSASGYHYDVPACNGCKTFFRRYVISKRLFT 65
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Frame = +1
Query: 52 PAVVEAVSAGTPSQRHCTHIFHEHYLFVVI----PQ*NYTRNDTVVISA*DPVSSDHSLR 219
P ++ A S GT S H H + P + T S + V H
Sbjct: 613 PHLIAATSTGTHSVSSSAHSTPRHSISGTPVHCEPSNSKTSQPPTPKSRPEKVQIRHDTI 672
Query: 220 SSAGDTNALVVFQRTMWSLTSGKRHRYIVPHPLLSATSTALVSR 351
S +G +NA+ Q S+TSG + P++ + LV++
Sbjct: 673 SKSGPSNAINALQARSQSMTSGDPKKSAPSTPVVRDAGSDLVAQ 716
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Frame = +1
Query: 52 PAVVEAVSAGTPSQRHCTHIFHEHYLFVVI----PQ*NYTRNDTVVISA*DPVSSDHSLR 219
P ++ A S GT S H H + P + T S + V H
Sbjct: 904 PHLIAATSTGTHSVSSSAHSTPRHSISGTPVHCEPSNSKTSQPPTPKSRPEKVQIRHDTI 963
Query: 220 SSAGDTNALVVFQRTMWSLTSGKRHRYIVPHPLLSATSTALVSR 351
S +G +NA+ Q S+TSG + P++ + LV++
Sbjct: 964 SKSGPSNAINALQARSQSMTSGDPKKSAPSTPVVRDAGSDLVAQ 1007
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Frame = +1
Query: 52 PAVVEAVSAGTPSQRHCTHIFHEHYLFVVI----PQ*NYTRNDTVVISA*DPVSSDHSLR 219
P ++ A S GT S H H + P + T S + V H
Sbjct: 919 PHLIAATSTGTHSVSSSAHSTPRHSISGTPVHCEPSNSKTSQPPTPKSRPEKVQIRHDTI 978
Query: 220 SSAGDTNALVVFQRTMWSLTSGKRHRYIVPHPLLSATSTALVSR 351
S +G +NA+ Q S+TSG + P++ + LV++
Sbjct: 979 SKSGPSNAINALQARSQSMTSGDPKKSAPSTPVVRDAGSDLVAQ 1022
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Frame = +1
Query: 52 PAVVEAVSAGTPSQRHCTHIFHEHYLFVVI----PQ*NYTRNDTVVISA*DPVSSDHSLR 219
P ++ A S GT S H H + P + T S + V H
Sbjct: 919 PHLIAATSTGTHSVSSSAHSTPRHSISGTPVHCEPSNSKTSQPPTPKSRPEKVQIRHDTI 978
Query: 220 SSAGDTNALVVFQRTMWSLTSGKRHRYIVPHPLLSATSTALVSR 351
S +G +NA+ Q S+TSG + P++ + LV++
Sbjct: 979 SKSGPSNAINALQARSQSMTSGDPKKSAPSTPVVRDAGSDLVAQ 1022
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Frame = +1
Query: 52 PAVVEAVSAGTPSQRHCTHIFHEHYLFVVI----PQ*NYTRNDTVVISA*DPVSSDHSLR 219
P ++ A S GT S H H + P + T S + V H
Sbjct: 613 PHLIAATSTGTHSVSSSAHSTPRHSISGTPVHCEPSNSKTSQPPTPKSRPEKVQIRHDTI 672
Query: 220 SSAGDTNALVVFQRTMWSLTSGKRHRYIVPHPLLSATSTALVSR 351
S +G +NA+ Q S+TSG + P++ + LV++
Sbjct: 673 SKSGPSNAINALQARSQSMTSGDPKKSAPSTPVVRDAGSDLVAQ 716
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Frame = +1
Query: 52 PAVVEAVSAGTPSQRHCTHIFHEHYLFVVI----PQ*NYTRNDTVVISA*DPVSSDHSLR 219
P ++ A S GT S H H + P + T S + V H
Sbjct: 904 PHLIAATSTGTHSVSSSAHSTPRHSISGTPVHCEPSNSKTSQPPTPKSRPEKVQIRHDTI 963
Query: 220 SSAGDTNALVVFQRTMWSLTSGKRHRYIVPHPLLSATSTALVSR 351
S +G +NA+ Q S+TSG + P++ + LV++
Sbjct: 964 SKSGPSNAINALQARSQSMTSGDPKKSAPSTPVVRDAGSDLVAQ 1007
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Frame = +1
Query: 52 PAVVEAVSAGTPSQRHCTHIFHEHYLFVVI----PQ*NYTRNDTVVISA*DPVSSDHSLR 219
P ++ A S GT S H H + P + T S + V H
Sbjct: 919 PHLIAATSTGTHSVSSSAHSTPRHSISGTPVHCEPSNSKTSQPPTPKSRPEKVQIRHDTI 978
Query: 220 SSAGDTNALVVFQRTMWSLTSGKRHRYIVPHPLLSATSTALVSR 351
S +G +NA+ Q S+TSG + P++ + LV++
Sbjct: 979 SKSGPSNAINALQARSQSMTSGDPKKSAPSTPVVRDAGSDLVAQ 1022
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Frame = +1
Query: 52 PAVVEAVSAGTPSQRHCTHIFHEHYLFVVI----PQ*NYTRNDTVVISA*DPVSSDHSLR 219
P ++ A S GT S H H + P + T S + V H
Sbjct: 919 PHLIAATSTGTHSVSSSAHSTPRHSISGTPVHCEPSNSKTSQPPTPKSRPEKVQIRHDTI 978
Query: 220 SSAGDTNALVVFQRTMWSLTSGKRHRYIVPHPLLSATSTALVSR 351
S +G +NA+ Q S+TSG + P++ + LV++
Sbjct: 979 SKSGPSNAINALQARSQSMTSGDPKKSAPSTPVVRDAGSDLVAQ 1022
>U40029-5|AAA81125.2| 457|Caenorhabditis elegans Hypothetical
protein F10G7.5a protein.
Length = 457
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +1
Query: 340 LVSRCNNRMAFSVYVASRRCDRTVYVVSESVAATPALSSIREDFMLFIMCI*YSMFRRFN 519
+ +C ++ FSV +C +V + + +T ALS I ++ LFI+C + + F
Sbjct: 367 ITHKCFSKANFSVMYGFLQCAVSVAGLIAGLISTHALSEIGFEY-LFIVCGCFMLTSLFL 425
Query: 520 RFVI 531
F++
Sbjct: 426 TFIV 429
>U40029-4|ABD94116.1| 471|Caenorhabditis elegans Hypothetical
protein F10G7.5b protein.
Length = 471
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +1
Query: 340 LVSRCNNRMAFSVYVASRRCDRTVYVVSESVAATPALSSIREDFMLFIMCI*YSMFRRFN 519
+ +C ++ FSV +C +V + + +T ALS I ++ LFI+C + + F
Sbjct: 381 ITHKCFSKANFSVMYGFLQCAVSVAGLIAGLISTHALSEIGFEY-LFIVCGCFMLTSLFL 439
Query: 520 RFVI 531
F++
Sbjct: 440 TFIV 443
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,517,290
Number of Sequences: 27780
Number of extensions: 301413
Number of successful extensions: 936
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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