Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0459
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.0  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   6.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.1  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 310 EELCIGVVYHLSTTTSF 260
           +E+ I V Y +STTTSF
Sbjct: 340 QEMSIEVPYWISTTTSF 356


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 399 ATARRDVHTKSHSVITSGDESGRSSREKRVRNYVSVSF 286
           A  R+DVH+ ++  + S       SR+ +VR  V+ ++
Sbjct: 95  AAFRQDVHSAAYRCVASNSVGRVLSRDVQVRAVVAQAY 132


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 399 ATARRDVHTKSHSVITSGDESGRSSREKRVRNYVSVSF 286
           A  R+DVH+ ++  + S       SR+ +VR  V+ ++
Sbjct: 95  AAFRQDVHSAAYRCVASNSVGRVLSRDVQVRAVVAQAY 132


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 121 VHGICACSGAATVFRRLQLPRRLGTRRS 38
           + G C C GA T+    +L  RL T +S
Sbjct: 7   IFGFCVCVGALTI---EELKTRLHTEQS 31


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -2

Query: 202 NLLGLMQISQPCRYVCSFTAGSQQTNSVHGICACSGAATVFRR 74
           NLLG +        V     G + +   +G+ +C G    FRR
Sbjct: 51  NLLGRVLAEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRR 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,044
Number of Sequences: 438
Number of extensions: 3759
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)