Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0459
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39770.1 68418.m04817 repair endonuclease family protein cont...    29   2.8  
At5g17800.1 68418.m02087 myb family transcription factor (MYB56)...    29   2.8  
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    28   5.0  
At3g13560.3 68416.m01706 glycosyl hydrolase family 17 protein si...    28   6.6  
At3g13560.2 68416.m01705 glycosyl hydrolase family 17 protein si...    28   6.6  
At3g13560.1 68416.m01704 glycosyl hydrolase family 17 protein si...    28   6.6  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    28   6.6  
At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putati...    27   8.7  

>At5g39770.1 68418.m04817 repair endonuclease family protein
           contains Pfam PF02732 : ERCC4 domain; similar to MUS81
           endonuclease (GI:16755674) [Mus musculus]; similar to
           repair endonuclease (TIGR:At5g41150) [Arabidopsis
           thaliana]
          Length = 1242

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 266 IVRWKTTRALVSPALDRRLWSELTG 192
           ++ W T R LV+ + D+R WS  +G
Sbjct: 594 VILWATARMLVNESYDKRRWSAASG 618


>At5g17800.1 68418.m02087 myb family transcription factor (MYB56)
           identical to putative transcription factor (MYB56)
           GI:3941473 from [Arabidopsis thaliana]
          Length = 323

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -3

Query: 393 ARRDVHTKSHSVITSGDESG--RSSREK--RVRNYVSVSFTTCQRPH 265
           +R   H KS SV+ S DE G  R   EK  R+R    ++   C R H
Sbjct: 49  SRNHPHNKSASVLESEDEHGNERGENEKSLRMRGKSGINTKVCSRGH 95


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -3

Query: 534 YYNKSIKPPKHTVLYTHYEQHKVLSDGAQRWSGGYALRHDIHGTVATARRDV 379
           Y   +++P   TV   H +  +     A+ W   YAL+H +   V   ++DV
Sbjct: 355 YIQTTVEPSNETVDLRHQDMDE--RKKAEEWMIDYALQHTVSKLVVERKKDV 404


>At3g13560.3 68416.m01706 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]
          Length = 505

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 54  WALGDLRASCRFLQPGDP 1
           WA G  RA+C  +QPG P
Sbjct: 380 WACGQGRANCAAIQPGQP 397


>At3g13560.2 68416.m01705 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]
          Length = 505

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 54  WALGDLRASCRFLQPGDP 1
           WA G  RA+C  +QPG P
Sbjct: 380 WACGQGRANCAAIQPGQP 397


>At3g13560.1 68416.m01704 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]
          Length = 505

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 54  WALGDLRASCRFLQPGDP 1
           WA G  RA+C  +QPG P
Sbjct: 380 WACGQGRANCAAIQPGQP 397


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -3

Query: 471 KVLSDGAQRWSGGYALRHDIHGTVATARRDVHTKSHSVITSGDES 337
           K+++  A++   G   +H++H ++      VHT+ H     GD+S
Sbjct: 260 KLVTLFARKEESGNTTQHEVHISLPDGGGPVHTEQHMQYAYGDQS 304


>At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putative
           / NADPH-ferrihemoprotein reductase, putative similar to
           NADPH-ferrihemoprotein reductase NADPH-cytochrome P450
           oxydoreductase isoform 1 [Populus balsamifera subsp.
           trichocarpa x Populus deltoides] GI:13183562, SP|P37116
           NADPH-cytochrome P450 reductase (EC 1.6.2.4) (CPR)
           [Vigna radiata] {Phaseolus aureus}
          Length = 692

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = -3

Query: 483 YEQHKVLSDGAQRW----SGGYALRHDIHGTVATARRDVHTKSHSVITSGDESGRSSRE 319
           Y QHK++   AQ W      GY     + G      RDVH   H+++   ++ G SS E
Sbjct: 620 YVQHKMMEKAAQVWDLIKEEGYLY---VCGDAKGMARDVHRTLHTIVQ--EQEGVSSSE 673


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,534,361
Number of Sequences: 28952
Number of extensions: 273944
Number of successful extensions: 835
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)