Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0457
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083... 33 0.24
08_02_0719 + 20388246-20390756,20391159-20391263 31 0.56
06_01_0898 + 6908826-6908974,6909059-6909428,6909510-6909929,691... 29 3.9
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91... 29 3.9
01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568 28 5.2
01_01_0051 + 389051-389623 28 5.2
11_06_0147 - 20626854-20627181,20627267-20627377,20627461-206278... 27 9.1
03_06_0118 + 31795050-31796404,31796513-31797083 27 9.1
03_05_0964 - 29254947-29256183,29256275-29256381 27 9.1
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 27 9.1
>07_03_1584 +
27907345-27907357,27907693-27908039,27908202-27908319,
27908653-27908705,27908808-27908978,27909447-27909643,
27909729-27909807,27909954-27909992,27910202-27910321,
27910417-27910518,27910654-27910737,27910832-27911074,
27911156-27911281,27911365-27911439,27911534-27911605,
27911807-27911926,27912075-27912172,27912643-27912802,
27912867-27912980,27913029-27913121,27913122-27913319,
27913404-27913497,27914032-27914192
Length = 958
Score = 32.7 bits (71), Expect = 0.24
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +1
Query: 301 EARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPRFDEGRPVTFGTVDDEGRIVA 480
EA +YA +K+ + G +PI VD R+ + ++ T+ R + D G+
Sbjct: 444 EAAAYARKKKVILKGD-LPIGVD---RNSVDTWVYPTLFRMNTATGAPPDYFDKNGQNWG 499
Query: 481 YPDYSWHENQGQNCG 525
+P Y+W E N G
Sbjct: 500 FPTYNWEEMSKDNYG 514
>08_02_0719 + 20388246-20390756,20391159-20391263
Length = 871
Score = 31.5 bits (68), Expect = 0.56
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = -1
Query: 463 RRLQFQMSQDVLRQNEVLSQISAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETR 284
RR+ Q+ +D RQN LS++ +F + H + T K++S M G L E
Sbjct: 525 RRMSIQIEEDDFRQNVSLSKLQTLFISNKIPHVPKLLSSTTALKVLS---MQGSLIEEFP 581
Query: 283 TPVPPIASPRGDYSSLRD 230
+ + R Y +LRD
Sbjct: 582 KEIGNLTHLR--YLNLRD 597
>06_01_0898 +
6908826-6908974,6909059-6909428,6909510-6909929,
6910017-6910315,6910390-6910648,6910732-6911041,
6911126-6911251,6911373-6911417,6911652-6911702,
6912041-6912153
Length = 713
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = -1
Query: 532 LVLRSFAPGFRAKNNPDRQ---RYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVAHRH 362
+V R+ PG R N ++ ++ PR +Q + VL EV+ ++ A TY+ +
Sbjct: 402 VVERTVPPGVRLFNRSEQAANTQWTPR-VQKYIDNWVLATEEVIDEVRAHTEATYLRYLR 460
Query: 361 QSAPRTQVR 335
PRT+ R
Sbjct: 461 WYLPRTRTR 469
>05_01_0135 +
908803-909059,913133-913187,913499-914047,914140-914365,
914446-914906
Length = 515
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 125 QLNKILSCWMLLNWKCRTESSDFFYCHIVWRAVGPVSER 241
Q+ +++C L NW ++ Y H W V P S R
Sbjct: 441 QVKTVIACCTLHNWILDNGDDEYVYDHETWYRVLPRSNR 479
>01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568
Length = 407
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/74 (22%), Positives = 30/74 (40%)
Frame = -3
Query: 605 VSPILPASIIQRRLHSSIATLNTEVSPPQFCPWFSCQE*SG*ATIRPSSSTVPNVTGRPS 426
+SPI + + + N + ++CP C E G T+ + T N+TG +
Sbjct: 294 LSPITASRLTFENIRMD-GVANPVIVDQKYCPEKDCPEKKGSKTVTIKNVTFRNITGTSN 352
Query: 425 SKRGIVTNIRDFLP 384
+ + D LP
Sbjct: 353 TPEAVSLLCSDQLP 366
>01_01_0051 + 389051-389623
Length = 190
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/79 (27%), Positives = 39/79 (49%)
Frame = -3
Query: 371 TSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAKQYDNRK 192
+S+S + + + S++ +SS +++SSS L RR P P Q+ K+
Sbjct: 101 SSSSESSSSSSSSSSESSSSSSSSSSESSSSSSDDDLARRRQQRNPSPPPQYKKEARRSP 160
Query: 191 NRSIPYDISSLKASNS*GS 135
+ S P S+ +S+S GS
Sbjct: 161 SPSPPSSSSTSSSSSSSGS 179
>11_06_0147 -
20626854-20627181,20627267-20627377,20627461-20627846,
20627949-20628057,20629375-20629421,20629506-20629646
Length = 373
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -3
Query: 323 SNAYDRASSFGNTNSSSAHCLTT 255
+N A+S GNT++SSA C+TT
Sbjct: 347 NNPTTAATSSGNTSASSAPCVTT 369
>03_06_0118 + 31795050-31796404,31796513-31797083
Length = 641
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 142 QLLDAFKLEMSYGI-ERFFLLSYCLACCWPGLGAKNNLRVVRQWAELEFVFP 294
+++DA +L +Y I E +L L C P GA+ ++R V Q+ E + FP
Sbjct: 544 KVIDA-RLHGNYNIDEAILVLKLGLLCSHPLPGARPSMRQVVQYLEGDMPFP 594
>03_05_0964 - 29254947-29256183,29256275-29256381
Length = 447
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 262 RQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDV 366
R+W +FP+E+ +S+ + F GS+ +D+
Sbjct: 174 RRWGTRRPIFPSEKPKSFTAHQTFSFQGSAYWVDL 208
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 27.5 bits (58), Expect = 9.1
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +1
Query: 286 VFPNEEARSYALEKRFYVPGSSVPIDVDVQHR-SGKKSRIFVTIPRFDEGRPVTFGTVDD 462
V E R++ +EK P +P V HR S KK + GR TVD
Sbjct: 310 VIEKEPNRNFVVEKGRGTPLKDIP---SVAHRISRKKPADLKFLHNVLFGRKGK--TVDF 364
Query: 463 EGRIVAYPDYSWHEN 507
+G I+ + + WHE+
Sbjct: 365 KGHILQFSGFVWHES 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,249,832
Number of Sequences: 37544
Number of extensions: 378175
Number of successful extensions: 983
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -