Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0455
         (710 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7P545 Cluster: Chromosome chr4 scaffold_6, whole genom...    33   5.2  
UniRef50_Q4UD93 Cluster: Putative uncharacterized protein; n=2; ...    33   6.9  
UniRef50_Q22KW4 Cluster: Putative uncharacterized protein; n=1; ...    33   6.9  
UniRef50_A0CWB9 Cluster: Chromosome undetermined scaffold_3, who...    33   9.2  

>UniRef50_A7P545 Cluster: Chromosome chr4 scaffold_6, whole genome
           shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
           chr4 scaffold_6, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 735

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -3

Query: 648 VASEVSMMILFEKLMHLVRACTYCYRVILNNTYLIEFNNISDLFLFCGSRFSFI 487
           V S V M  LF KL HL    +     ++    L+  N   + F+ C SRFS +
Sbjct: 443 VMSNVEMRSLFAKLCHLDELLSLIEEFLMGKKVLVYNNASPESFVVCDSRFSIL 496


>UniRef50_Q4UD93 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria annulata
          Length = 361

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 15/67 (22%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
 Frame = -3

Query: 702 SHCMLSISKSLHQYVCVKVASEVSMMILFEKLMHLVRACTYCYRVILNNTYLIEFNNI-- 529
           S C ++I++++H+++ +K    V+ +  F+K+++ ++   YCY++ +++   +  + I  
Sbjct: 122 SSCKIAINRAIHEFLNLK--ENVTNIAKFDKILNNLKVVGYCYKLPVSSKARLTQSIIES 179

Query: 528 SDLFLFC 508
           S++F  C
Sbjct: 180 SEVFKLC 186


>UniRef50_Q22KW4 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1134

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 20/102 (19%), Positives = 41/102 (40%)
 Frame = +1

Query: 277  LSRAVELTSVKGKVNVLLLLMFINMAWSYFIIIVLILNYYCLFIIA*VDKKCYAIVLPRQ 456
            +SR +    +   +++LL L  ++      I++ + L    LF+I      C+     ++
Sbjct: 862  ISRLISAQVLYTTISILLNLNKLDKFIKELILVAINLAALVLFLIIQTQYSCFLFKQNKK 921

Query: 457  SPSATRVFFFNKRKPTSTKQKEITNIVELN*ICIIKDNSVTI 582
                  +  F + +       +    + +N ICIIK N   I
Sbjct: 922  QTDTFSICSFEQAQQVQNNNSKTNQTIMINDICIIKGNKYLI 963


>UniRef50_A0CWB9 Cluster: Chromosome undetermined scaffold_3, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_3,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 432

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +1

Query: 265 VCPSLSRAVELTSVKGKVNVLLLLMFINMAWSYFIIIVLIL 387
           + PS  RA    S++  +++L   MFI ++W+Y ++I ++L
Sbjct: 223 ILPSFKRAFR--SIESIMDLLTFSMFIGVSWAYMVVIAILL 261


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,370,503
Number of Sequences: 1657284
Number of extensions: 11172555
Number of successful extensions: 24537
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24529
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)