Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0455
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    28   1.5  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   2.6  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    27   2.6  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    27   2.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   6.1  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    26   6.1  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    25   8.1  

>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -3

Query: 606 MHLVRACTYCYRVILNNTYLI---EFNNISDLFLFCGSRFSF 490
           +H +R+C Y  + I+    ++    +N    LFLFCG+ F +
Sbjct: 204 LHFLRSCFYLVQYIVAYIAMLLAMYYNGYVILFLFCGTFFGY 245


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 696 CMLSISKSLHQYVCVKVASEVSMMILFEKLMHLVRACTYCYRVILNN--TYLIEFNNISD 523
           CML + KS ++Y+   +  E    + FEK++ +  +      V +    T   +F+NI  
Sbjct: 79  CMLLLYKSKYEYITWDLIDENRFQLFFEKVIEVSLSLNLSEVVYMIQFITLCFQFSNIEK 138

Query: 522 L 520
           L
Sbjct: 139 L 139


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 368 IK*DHAIFININKSKTLTFPFTLVSSTAR-ERDGQTFHDARAY 243
           I+ D    IN+++    T PF +VSS    E +GQT    RAY
Sbjct: 235 IEEDEEAIINLSQQLRATIPFAIVSSDRLIEMNGQTVR-GRAY 276


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/38 (23%), Positives = 23/38 (60%)
 Frame = +3

Query: 297 YECEGEG*CFAFVNVYKYGVVLFYYYCFNIKLLLSIYN 410
           ++C+ +G C++ + V++    L  ++ F +  +LS+ N
Sbjct: 80  FDCQNDGKCYSVIAVHRLSFTLVMFHLF-LAFILSLCN 116


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 546  IEFNNISDLFLFCGSRFSFIKKKNTCGTRG 457
            +E +N S+L   C SRFS ++ ++ C   G
Sbjct: 2547 LEKDNTSELCSLCDSRFSLMEWRSQCRACG 2576


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 642 SEVSMMILFEKLMHLVRACTYCYRVILNNTYLIEF-NNISDLFLFCGSRFSFIKKKNTCG 466
           S V M+ILF  L   +   +  + +IL   YLI+F  N+    LF  S FS + + ++  
Sbjct: 69  SSVLMLILFSWLAIHIPKSSVPHALILFYVYLIDFLLNVLFTVLFALSWFSKLVQSDSSS 128

Query: 465 T 463
           T
Sbjct: 129 T 129


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 299 VSSTARERD-GQTFHDARAYSQTLHKR 222
           + ST+ ER+ G+T    RAY +T H+R
Sbjct: 291 LDSTSEEREKGKTVEVGRAYFETEHRR 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,632
Number of Sequences: 5004
Number of extensions: 49113
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)