Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0455
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0457 - 3623163-3623172,3624806-3625183,3625316-3625332           30   1.6  
06_03_0192 + 17755807-17755941,17756023-17756235,17758003-177580...    28   8.4  

>05_01_0457 - 3623163-3623172,3624806-3625183,3625316-3625332
          Length = 134

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 182 EWG-C*VLFSLRNFLIRSPRSKPAIKAIQ*LKTPQLRGHQNTSLERIKVTQIT 27
           +W  C +LF + + LI    S+  ++ +    +P LRG    S+ R K+T++T
Sbjct: 82  DWSLCEILFMVDDILIEKVHSRYLLRNLLKKWSPYLRGQSIYSITRTKLTRLT 134


>06_03_0192 +
           17755807-17755941,17756023-17756235,17758003-17758086,
           17759280-17759948
          Length = 366

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 174 PPLRLPCSSRSTHSHVA 224
           PPLRLPCSS S+ S  A
Sbjct: 11  PPLRLPCSSSSSPSPAA 27


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,420,557
Number of Sequences: 37544
Number of extensions: 294881
Number of successful extensions: 650
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)