Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0455
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33366| Best HMM Match : 7tm_1 (HMM E-Value=2.29813e-43)             31   0.70 
SB_47386| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_9667| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_9668| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  

>SB_33366| Best HMM Match : 7tm_1 (HMM E-Value=2.29813e-43)
          Length = 364

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 201 RSTHSHVALV*CL*ISACIMKSLPISLSRGRAYECEGEG*CFAF--VNVYKYGVVLFYYY 374
           R  +S V  V C+  +  +  +LPISL+  R +  + +G C+      +Y  GV +   +
Sbjct: 156 RYPNSIVRTVICIIWAVSLALALPISLAYNRKFGFKQDGYCYDSDRDTIYLIGVTVMGIF 215

Query: 375 CFNIKLLLSI 404
           C+ I L ++I
Sbjct: 216 CYVIPLSIAI 225


>SB_47386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 364 FIIIVLILNYYCLFIIA*VDKKCYAIVLPRQSPSATR 474
           F+     +N  CL  +    KKC+++V PR +P   R
Sbjct: 20  FLATATAMNKQCLIALVIEAKKCFSVVRPRWNPPKNR 56


>SB_9667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 253 HALIHKHYTSATCECVERELHGRRSGGV-RFYFRYGI 146
           HAL  KH+ + T EC++  LH   +  V R  ++Y +
Sbjct: 50  HALTSKHFCNGTDECMDLSLHPNYTDWVCRNRYKYSV 86


>SB_9668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 253 HALIHKHYTSATCECVERELHGRRSGGV-RFYFRYGI 146
           HAL  KH+   T EC++  LH   +  V R  ++Y +
Sbjct: 147 HALTSKHFCKGTDECMDLSLHPNYTDWVCRNRYKYSV 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,680,314
Number of Sequences: 59808
Number of extensions: 362164
Number of successful extensions: 756
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)