Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0455
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.6  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 6   ESDEDKYRYLCNLDS 50
           +SD +KY+  CNL++
Sbjct: 194 DSDIEKYKMFCNLEN 208


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 359 DHAIFININKSKTLTFPFTLVSSTARERDGQTFHDARAYSQ 237
           D  + +NI KS+  +  +   S++ R R     H +  YS+
Sbjct: 182 DTVLVVNIEKSENESKKYATSSNSLRNRTHGFQHTSSRYSR 222


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 359 DHAIFININKSKTLTFPFTLVSSTARERDGQTFHDARAYSQ 237
           D  + +NI KS   +  +   S++ R R     H +  YS+
Sbjct: 193 DTVLVVNIKKSGNESKKYATSSNSLRNRTHDFQHTSSRYSR 233


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 359 DHAIFININKSKTLTFPFTLVSSTARERDGQTFHDARAYSQ 237
           D  + +NI KS   +  +   S++ R R     H +  YS+
Sbjct: 193 DTVLVVNIEKSGNESKKYATSSNSLRSRTHDFQHTSSRYSR 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,061
Number of Sequences: 438
Number of extensions: 3615
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)