Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0455
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19240.1 68416.m02441 expressed protein                             28   5.3  
At4g33400.1 68417.m04747 dem protein-related / defective embryo ...    28   7.0  
At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase fa...    28   7.0  
At2g42930.1 68415.m05320 glycosyl hydrolase family protein 17 si...    27   9.3  

>At3g19240.1 68416.m02441 expressed protein
          Length = 648

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -3

Query: 597 VRACTYCYRVILNNTYLIEFNNISDLFLFCGSR 499
           +++C YCY+++L +  ++E   + D F F G++
Sbjct: 593 LKSC-YCYKILLKDESIVESRFMHDNFSFSGNK 624


>At4g33400.1 68417.m04747 dem protein-related / defective embryo and
           meristems protein-related identical to dem GI:2190419
           from [Lycopersicon esculentum]
          Length = 645

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 582 YCYRVILNNTYLIEFNNISDLFLFCGS 502
           YCY+++L N  +++   ++D F   GS
Sbjct: 597 YCYKIVLRNESIVDSRFMNDNFAISGS 623


>At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from Homo sapiens [SP|O43520], Mus
            musculus [SP|P70704]; contains InterPro accession
            IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1240

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 321  CFAFVNVYKYGVVLFYYYCFNIKLLLSIYN 410
            C+ F     +G+ LFY+ CF      SIYN
Sbjct: 947  CYFFYKNITFGLTLFYFECFTGFSGQSIYN 976


>At2g42930.1 68415.m05320 glycosyl hydrolase family protein 17
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 134

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +1

Query: 436 AIVLPRQSPSATRVFFFNKRKPTS 507
           A VL  Q PS T+ F F K KPTS
Sbjct: 107 AAVLTVQDPSNTKHFTFEKIKPTS 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,547,622
Number of Sequences: 28952
Number of extensions: 248928
Number of successful extensions: 560
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)