Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0454
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.4  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   3.1  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   3.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   4.1  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 310 TYNIGSASMASYSLCHKHVTNDWK 381
           T N    S   Y   +K +TNDW+
Sbjct: 287 TRNADDISQEEYGEFYKSLTNDWE 310


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 529 HRHIDSIGACSITPRREQKIWSRNNRENVSAPLCGF-LLDQNQRSFTKKSLI 681
           HR    I   S+T + +   WS+ + ++  A + G  L+ +   + T  S+I
Sbjct: 239 HRRGHEIAVFSLTHKEDPNYWSQGSYDDWLAEMAGARLIVERFANITDGSII 290


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 529 HRHIDSIGACSITPRREQKIWSRNNRENVSAPLCGF-LLDQNQRSFTKKSLI 681
           HR    I   S+T + +   WS+ + ++  A + G  L+ +   + T  S+I
Sbjct: 246 HRRGHEIAVFSLTHKEDPNYWSQGSYDDWLAEMAGARLIVERFANITDGSII 297


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 437 KSFTFIVRLPIIKKKSE 387
           K FTF+ +   IK+KSE
Sbjct: 173 KEFTFVSKYITIKRKSE 189


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,146
Number of Sequences: 336
Number of extensions: 2990
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)