Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0454
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0179 + 27250706-27251593,27252172-27252462,27252510-272525...    29   3.5  
05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980     29   4.6  
08_02_0423 - 16946435-16946542,16946924-16947045,16947442-169475...    28   8.1  
07_03_1115 - 24076506-24076677,24077169-24077266,24077622-240777...    28   8.1  
05_03_0296 - 11875922-11876378,11876705-11877045                       28   8.1  
04_03_0144 + 11796550-11797178,11797808-11797902,11798053-117981...    28   8.1  
04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019           28   8.1  

>01_06_0179 +
           27250706-27251593,27252172-27252462,27252510-27252575,
           27252732-27252871,27254709-27254814,27254898-27254990,
           27255398-27255487,27256403-27256525,27256708-27256781,
           27256878-27256932,27257087-27257322,27257959-27258088,
           27258170-27258272,27258428-27258525,27258973-27259038,
           27259252-27259419
          Length = 908

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -2

Query: 184 ASSVASVGEGDGPGSGHASGRLPQHQHVVA 95
           +SS  S G G G GSG   GRL    H+VA
Sbjct: 39  SSSSTSGGGGGGGGSGGVLGRLDLSTHIVA 68


>05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980
          Length = 681

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/41 (26%), Positives = 26/41 (63%)
 Frame = +3

Query: 138 PDPGPSPSPTDATLDALIVYVICIRRSPLR*ELARNLTMSD 260
           P P  + S TDA  D ++ +++ + ++P+  E+A+ L +++
Sbjct: 10  PSPPRASSDTDAAFDPVVEWLLDLDQAPMADEVAKGLGIAE 50


>08_02_0423 -
           16946435-16946542,16946924-16947045,16947442-16947504,
           16949707-16949844,16950062-16950170,16950610-16950934,
           16952482-16952645
          Length = 342

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 640 IRTRTTVR*HFLGCFSTKSFVRV*ELSNKPRCYLCVYV*TL 518
           +R +  V  +F   +    F R+ E    P CY C+ V TL
Sbjct: 28  LRWQPEVEEYFAAAYGRDRFARISEALAHPSCYSCIRVNTL 68


>07_03_1115 -
           24076506-24076677,24077169-24077266,24077622-24077743,
           24079059-24079235,24079809-24079897,24079919-24079965,
           24080423-24080519,24080600-24080682,24080716-24080796,
           24081043-24081199,24081323-24081750,24081985-24082014,
           24083180-24083300,24083432-24083697
          Length = 655

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 263 IDMSYELTYPNFSVHIH 313
           +DMS  +TYPN   H+H
Sbjct: 534 VDMSINVTYPNLKPHLH 550


>05_03_0296 - 11875922-11876378,11876705-11877045
          Length = 265

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -2

Query: 187 RASSVASVGEGDGPGSGHASGR 122
           R   V   GEG G GSG ASGR
Sbjct: 220 RQLRVGRAGEGRGEGSGRASGR 241


>04_03_0144 +
           11796550-11797178,11797808-11797902,11798053-11798102,
           11798382-11799293
          Length = 561

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 187 RASSVASVGEGDGPGSGHASGRLPQHQHVVAL 92
           R  S AS   G+G G G A G+LP     V+L
Sbjct: 35  RPLSAASAAGGEGVGGGGARGKLPPKSPSVSL 66


>04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019
          Length = 486

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 175 VASVGEGDGPGSGHASGRLPQHQHVVALV 89
           VA+V     P S  AS RLP H H V LV
Sbjct: 8   VATVTCASSPRSSLASLRLPLHDHAVTLV 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,089,486
Number of Sequences: 37544
Number of extensions: 295362
Number of successful extensions: 1296
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)