Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0454
         (692 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ133103-1|CAB63452.1|  897|Drosophila melanogaster RFX transcri...    29   4.5  
AE014297-1144|AAF54526.2|  897|Drosophila melanogaster CG6312-PA...    29   4.5  
BT001617-1|AAN71372.1| 1044|Drosophila melanogaster RE34950p pro...    29   6.0  
AE014296-1012|AAF50744.2| 1044|Drosophila melanogaster CG10542-P...    29   6.0  

>AJ133103-1|CAB63452.1|  897|Drosophila melanogaster RFX
           transcription factor protein.
          Length = 897

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 353 HKEYEAIDADPILYVCEQRNSDMSIHMTCQY 261
           HK  EA D   I  +CE+   DM     CQ+
Sbjct: 835 HKIAEAQDKTAIAVICERMKKDMDFEFECQF 865


>AE014297-1144|AAF54526.2|  897|Drosophila melanogaster CG6312-PA
           protein.
          Length = 897

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 353 HKEYEAIDADPILYVCEQRNSDMSIHMTCQY 261
           HK  EA D   I  +CE+   DM     CQ+
Sbjct: 835 HKIAEAQDKTAIAVICERMKKDMDFEFECQF 865


>BT001617-1|AAN71372.1| 1044|Drosophila melanogaster RE34950p
           protein.
          Length = 1044

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 214 RRMQITYTIRASSVASVGEGDGPGSG 137
           R  +IT+ ++  S+AS G G G G+G
Sbjct: 170 RNEKITHVLKGDSLASAGSGSGAGAG 195


>AE014296-1012|AAF50744.2| 1044|Drosophila melanogaster CG10542-PA
           protein.
          Length = 1044

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 214 RRMQITYTIRASSVASVGEGDGPGSG 137
           R  +IT+ ++  S+AS G G G G+G
Sbjct: 170 RNEKITHVLKGDSLASAGSGSGAGAG 195


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,887,615
Number of Sequences: 53049
Number of extensions: 514703
Number of successful extensions: 2118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2076
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)